METTL5P1 (METTL5 pseudogene 1) - Rat Genome Database

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Gene: METTL5P1 (METTL5 pseudogene 1) Homo sapiens
Analyze
Symbol: METTL5P1
Name: METTL5 pseudogene 1
RGD ID: 16561748
HGNC Page HGNC:56501
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AC006530.1; LOC100131950; methyltransferase like 5 (METTL5) pseudogene; methyltransferase like 5 pseudogene
Related Functional Gene: METTL5  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381474,873,600 - 74,874,254 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1474,873,684 - 74,874,254 (+)EnsemblGRCh38hg38GRCh38
GRCh371475,340,303 - 75,340,957 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q24.3NCBI
HuRef1455,508,389 - 55,508,959 (+)NCBIHuRef
CHM1_11475,279,543 - 75,280,113 (+)NCBICHM1_1
T2T-CHM13v2.01469,082,700 - 69,083,354 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in METTL5P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:211
Interacting mature miRNAs:215
Transcripts:ENST00000555980
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium
Low 2 4 3 2 14 1 7 3 16 2 17 4 3 1 1 5 1 2
Below cutoff 140 174 164 24 114 16 369 144 338 28 138 147 10 99 245

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000555980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1474,873,684 - 74,874,254 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC METTL5P1 COSMIC
Ensembl Genes ENSG00000258587 Ensembl, ENTREZGENE
GTEx ENSG00000258587 GTEx
HGNC ID HGNC:56501 ENTREZGENE
Human Proteome Map METTL5P1 Human Proteome Map
NCBI Gene LOC100131950 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-31 METTL5P1  METTL5 pseudogene 1  AC006530.1  methyltransferase like 5 (METTL5) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC006530.1  methyltransferase like 5 (METTL5) pseudogene  LOC100131950  methyltransferase like 5 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100131950  methyltransferase like 5 pseudogene  AC006530.1  methyltransferase like 5 (METTL5) pseudogene  Symbol and/or name change 5135510 APPROVED