AC079949.1 (novel transcript) - Rat Genome Database

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Gene: AC079949.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC079949.1
Name: novel transcript
RGD ID: 16560939
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC107984450; uncharacterized LOC107984450
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812127,142,005 - 127,146,080 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12127,142,029 - 127,146,532 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map12q24.32NCBI
CHM1_112127,449,067 - 127,451,062 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:533
Count of miRNA genes:447
Interacting mature miRNAs:490
Transcripts:ENST00000488123, ENST00000535022, ENST00000541419
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 29 8 8 9 8 26 4 2 2 16 36 1
Low 514 60 696 220 233 218 505 70 1290 146 645 425 14 1 475 221 1 1
Below cutoff 1603 1418 826 304 506 195 2248 1425 2277 189 584 850 110 678 1419

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000535022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12127,145,641 - 127,145,989 (-)Ensembl
RefSeq Acc Id: ENST00000541419
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12127,145,072 - 127,146,532 (-)Ensembl
RefSeq Acc Id: ENST00000658388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12127,142,517 - 127,146,088 (-)Ensembl
RefSeq Acc Id: ENST00000664581
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12127,142,029 - 127,146,078 (-)Ensembl
RefSeq Acc Id: ENST00000670342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12127,143,723 - 127,146,121 (-)Ensembl
RefSeq Acc Id: XR_001749390
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812127,144,088 - 127,146,080 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007063520
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812127,142,005 - 127,146,080 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC AC079949.1 COSMIC
Ensembl Genes ENSG00000256001 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000664581 ENTREZGENE
  ENST00000670342 ENTREZGENE
GTEx ENSG00000256001 GTEx
Human Proteome Map AC079949.1 Human Proteome Map
NCBI Gene LOC107984450 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC079949.1  novel transcript  LOC107984450  uncharacterized LOC107984450  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC107984450  uncharacterized LOC107984450  AC079949.1  novel transcript  Symbol and/or name change 5135510 APPROVED