AP002383.1 (lysine (K)-specific demethylase 4D (KDM4D) pseudogene) - Rat Genome Database

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Gene: AP002383.1 (lysine (K)-specific demethylase 4D (KDM4D) pseudogene) Homo sapiens
Analyze
Symbol: AP002383.1
Name: lysine (K)-specific demethylase 4D (KDM4D) pseudogene
RGD ID: 16560853
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100420801; lysine demethylase 4D pseudogene
Related Functional Gene: KDM4D  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,011,858 - 95,012,532 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,011,858 - 95,012,532 (+)EnsemblGRCh38hg38GRCh38
GRCh371194,745,022 - 94,745,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q21NCBI
HuRef1190,809,952 - 90,810,626 (+)NCBIHuRef
CHM1_11194,628,024 - 94,628,698 (+)NCBICHM1_1
T2T-CHM13v2.01195,018,890 - 95,019,564 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:276
Count of miRNA genes:262
Interacting mature miRNAs:275
Transcripts:ENST00000545768
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 9 4 1 1 35 1 1 1 3
Below cutoff 169 158 197 52 87 13 636 168 384 34 416 169 40 116 413

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000545768
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,011,858 - 95,012,532 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP002383.1 COSMIC
Ensembl Genes ENSG00000255653 Ensembl, ENTREZGENE
GTEx ENSG00000255653 GTEx
Human Proteome Map AP002383.1 Human Proteome Map
NCBI Gene LOC100420801 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AP002383.1  lysine (K)-specific demethylase 4D (KDM4D) pseudogene  LOC100420801  lysine demethylase 4D pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100420801  lysine demethylase 4D pseudogene  AP002383.1  lysine (K)-specific demethylase 4D (KDM4D) pseudogene  Symbol and/or name change 5135510 APPROVED