AL024493.1 (null) - Rat Genome Database

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Gene: AL024493.1 (null) Homo sapiens
Analyze
Symbol: AL024493.1
Name:
RGD ID: 16559395
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AL024493.2
RGD Orthologs
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X88,148,792 - 88,148,918 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX88,148,792 - 88,148,918 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic MapXq21.31NCBI
T2T-CHM13v2.0X86,575,858 - 86,575,984 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
AL024493.1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X88,148,792 - 88,148,918 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX88,148,792 - 88,148,918 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic MapXq21.31NCBI
T2T-CHM13v2.0X86,575,858 - 86,575,984 (+)NCBIT2T-CHM13v2.0
Gm22156
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391112,626,933 - 12,627,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1112,626,933 - 12,627,073 (+)EnsemblGRCm39 Ensembl
GRCm381112,676,933 - 12,677,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1112,676,933 - 12,677,073 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
LOC120096840
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81491,541,331 - 91,541,469 (-)NCBIGRCr8
mRatBN7.21487,327,771 - 87,327,909 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1487,327,771 - 87,327,909 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map14q21NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:269
Count of miRNA genes:254
Interacting mature miRNAs:259
Transcripts:ENST00000516207
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

integumental system musculoskeletal system reproductive system appendage
High
Medium
Low 1
Below cutoff 1 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516207
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX88,148,792 - 88,148,918 (+)Ensembl
RefSeq Acc Id: XR_007068447
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X88,148,792 - 88,148,918 (+)NCBI
RefSeq Acc Id: XR_007091280
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X86,575,858 - 86,575,984 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC AL024493.1 COSMIC
Ensembl Genes ENSG00000252016 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000516207 ENTREZGENE
GTEx ENSG00000252016 GTEx
Human Proteome Map AL024493.1 Human Proteome Map
NCBI Gene LOC124900505 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-07 AL024493.1    AL024493.2    Symbol and/or name change 19259462 PROVISIONAL