Gm22156 (predicted gene, 22156) - Rat Genome Database

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Gene: Gm22156 (predicted gene, 22156) Mus musculus
Analyze
Symbol: Gm22156
Name: predicted gene, 22156
RGD ID: 15000079
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391112,626,933 - 12,627,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1112,626,933 - 12,627,073 (+)EnsemblGRCm39 Ensembl
GRCm381112,676,933 - 12,677,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1112,676,933 - 12,677,073 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm22156
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391112,626,933 - 12,627,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1112,626,933 - 12,627,073 (+)EnsemblGRCm39 Ensembl
GRCm381112,676,933 - 12,677,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1112,676,933 - 12,677,073 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11A1NCBI
AL024493.1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X88,148,792 - 88,148,918 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX88,148,792 - 88,148,918 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic MapXq21.31NCBI
T2T-CHM13v2.0X86,575,858 - 86,575,984 (+)NCBIT2T-CHM13v2.0
LOC120096840
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81491,541,331 - 91,541,469 (-)NCBIGRCr8
mRatBN7.21487,327,771 - 87,327,909 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1487,327,771 - 87,327,909 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map14q21NCBI

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Variants in Gm22156
8 total Variants

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:73
Interacting mature miRNAs:75
Transcripts:ENSMUST00000158409
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse

1 to 10 of 45 rows





RefSeq Transcripts XR_004937374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL645934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1112,626,933 - 12,627,073 (+)Ensembl
GRCm38.p6 Ensembl1112,676,933 - 12,677,073 (+)Ensembl
RefSeq Acc Id: XR_004937374
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391112,626,933 - 12,627,073 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000089034 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158409 ENTREZGENE
MGD MGI:5451933 ENTREZGENE
NCBI Gene Gm22156 ENTREZGENE
PhenoGen Gm22156 PhenoGen
RNAcentral URS000064B80D RNACentral