AC008638.2 (developmental pluripotency associated 2 (DPPA2) pseudogene) - Rat Genome Database

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Gene: AC008638.2 (developmental pluripotency associated 2 (DPPA2) pseudogene) Homo sapiens
Analyze
Symbol: AC008638.2
Name: developmental pluripotency associated 2 (DPPA2) pseudogene
RGD ID: 16558700
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: developmental pluripotency associated 2 pseudogene; LOC100421141
Related Functional Gene: DPPA2  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38477,311,425 - 77,312,117 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl477,311,397 - 77,312,111 (-)EnsemblGRCh38hg38GRCh38
GRCh37478,232,578 - 78,233,270 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q21.1NCBI
HuRef473,984,444 - 73,985,136 (-)NCBIHuRef
CHM1_1478,209,765 - 78,210,457 (-)NCBICHM1_1
T2T-CHM13v2.0480,652,240 - 80,652,932 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:87
Interacting mature miRNAs:87
Transcripts:ENST00000503840
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 3 2 2 1
Below cutoff 57 116 26 9 51 2 160 52 157 15 45 45 7 44 101

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000503840
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl477,311,397 - 77,312,111 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008638.2 COSMIC
Ensembl Genes ENSG00000250006 Ensembl, ENTREZGENE
GTEx ENSG00000250006 GTEx
Human Proteome Map AC008638.2 Human Proteome Map
NCBI Gene LOC100421141 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC008638.2  developmental pluripotency associated 2 (DPPA2) pseudogene  LOC100421141  developmental pluripotency associated 2 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100421141  developmental pluripotency associated 2 pseudogene  AC008638.2  developmental pluripotency associated 2 (DPPA2) pseudogene  Symbol and/or name change 5135510 APPROVED