TERLR1 (TERT regulating lncRNA 1)

Gene: TERLR1 (TERT regulating lncRNA 1) Homo sapiens

Analyze

Symbol:

TERLR1

Name:

TERT regulating lncRNA 1

RGD ID:

16558424

HGNC Page

HGNC:52952

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

AC114291.1; CTD-3080P12.3; uncharacterized LOC101928857

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	1,173,096 - 1,178,605 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	1,173,141 - 1,178,605 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	1,173,211 - 1,178,720 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	5	p15.33	NCBI
HuRef	5	1,153,403 - 1,163,071 (-)	NCBI		HuRef
CHM1_1	5	1,173,017 - 1,176,471 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	1,079,578 - 1,085,087 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:14702039	PMID:26549025	PMID:27726103

Genomics

Variants

Variants in TERLR1
1 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 5p15.33-15.2(chr5:22149-11530391)x1	copy number loss	See cases [RCV000137915]	Chr5:22149..11530391 [GRCh38] Chr5:22149..11530503 [GRCh37] Chr5:75149..11583503 [NCBI36] Chr5:5p15.33-15.2	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-2323943)x3	copy number gain	See cases [RCV000139303]	Chr5:22149..2323943 [GRCh38] Chr5:22149..2324057 [GRCh37] Chr5:75149..2377057 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:22149-5059896)x1	copy number loss	See cases [RCV000143018]	Chr5:22149..5059896 [GRCh38] Chr5:22149..5060009 [GRCh37] Chr5:75149..5113009 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33(chr5:1085824-1315406)x3	copy number gain	See cases [RCV000135385]	Chr5:1085824..1315406 [GRCh38] Chr5:1085939..1315521 [GRCh37] Chr5:1138939..1368521 [NCBI36] Chr5:5p15.33	uncertain significance
GRCh38/hg38 5p15.33(chr5:22149-3404244)x1	copy number loss	See cases [RCV000050885]	Chr5:22149..3404244 [GRCh38] Chr5:22149..3404358 [GRCh37] Chr5:75149..3457358 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33(chr5:49978-4014647)x1	copy number loss	See cases [RCV000051100]	Chr5:49978..4014647 [GRCh38] Chr5:50093..4014761 [GRCh37] Chr5:103093..4067761 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-3556942)x1	copy number loss	See cases [RCV000053400]	Chr5:22149..3556942 [GRCh38] Chr5:22149..3557056 [GRCh37] Chr5:75149..3610056 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:54839-5603401)x1	copy number loss	See cases [RCV000053444]	Chr5:54839..5603401 [GRCh38] Chr5:54954..5603514 [GRCh37] Chr5:107954..5656514 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33-15.1(chr5:49978-15678451)x1	copy number loss	See cases [RCV000050295]	Chr5:49978..15678451 [GRCh38] Chr5:50093..15678560 [GRCh37] Chr5:103093..15731560 [NCBI36] Chr5:5p15.33-15.1	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-27485619)x1	copy number loss	See cases [RCV000137072]	Chr5:22149..27485619 [GRCh38] Chr5:22149..27485726 [GRCh37] Chr5:75149..27521483 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-14.2(chr5:22149-23607053)x3	copy number gain	See cases [RCV000137806]	Chr5:22149..23607053 [GRCh38] Chr5:22149..23607162 [GRCh37] Chr5:75149..23642919 [NCBI36] Chr5:5p15.33-14.2	pathogenic
GRCh38/hg38 5p15.33-14.3(chr5:22419-19280892)x1	copy number loss	See cases [RCV000053419]	Chr5:22419..19280892 [GRCh38] Chr5:22419..19281001 [GRCh37] Chr5:75419..19316758 [NCBI36] Chr5:5p15.33-14.3	pathogenic
GRCh38/hg38 5p15.33-13.3(chr5:49978-30112535)x1	copy number loss	See cases [RCV000135878]	Chr5:49978..30112535 [GRCh38] Chr5:50093..30112642 [GRCh37] Chr5:103093..30148399 [NCBI36] Chr5:5p15.33-13.3	pathogenic
GRCh38/hg38 5p15.33-13.2(chr5:54839-35680845)x3	copy number gain	See cases [RCV000051811]	Chr5:54839..35680845 [GRCh38] Chr5:54954..35680947 [GRCh37] Chr5:107954..35716704 [NCBI36] Chr5:5p15.33-13.2	pathogenic
GRCh38/hg38 5p15.33-13.3(chr5:22149-32248010)x1	copy number loss	See cases [RCV000135668]	Chr5:22149..32248010 [GRCh38] Chr5:22149..32248116 [GRCh37] Chr5:75149..32283873 [NCBI36] Chr5:5p15.33-13.3	pathogenic
GRCh38/hg38 5p15.33-13.3(chr5:22149-33418188)x3	copy number gain	See cases [RCV000133788]	Chr5:22149..33418188 [GRCh38] Chr5:22149..33418294 [GRCh37] Chr5:75149..33454051 [NCBI36] Chr5:5p15.33-13.3	pathogenic
GRCh38/hg38 5p15.33-15.31(chr5:113461-8875933)x1	copy number loss	See cases [RCV000141930]	Chr5:113461..8875933 [GRCh38] Chr5:113576..8876045 [GRCh37] Chr5:166576..8929045 [NCBI36] Chr5:5p15.33-15.31	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:22149-6060102)x1	copy number loss	See cases [RCV000138215]	Chr5:22149..6060102 [GRCh38] Chr5:22149..6060215 [GRCh37] Chr5:75149..6113215 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-1659135)x3	copy number gain	See cases [RCV000142646]	Chr5:22149..1659135 [GRCh38] Chr5:22149..1659250 [GRCh37] Chr5:75149..1712250 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-27187950)x1	copy number loss	See cases [RCV000138099]	Chr5:22149..27187950 [GRCh38] Chr5:22149..27188057 [GRCh37] Chr5:75149..27223814 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-3619159)	copy number gain	See cases [RCV000139908]	Chr5:22149..3619159 [GRCh38] Chr5:22149..3619273 [GRCh37] Chr5:75149..3672273 [NCBI36] Chr5:5p15.33	uncertain significance
GRCh38/hg38 5p15.33(chr5:821764-1271935)x3	copy number gain	See cases [RCV000137788]	Chr5:821764..1271935 [GRCh38] Chr5:821879..1272050 [GRCh37] Chr5:874879..1325050 [NCBI36] Chr5:5p15.33	likely benign
GRCh38/hg38 5p15.33-14.1(chr5:22149-27611163)x1	copy number loss	See cases [RCV000142934]	Chr5:22149..27611163 [GRCh38] Chr5:22149..27611270 [GRCh37] Chr5:75149..27647027 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-15.1(chr5:22149-15851376)x3	copy number gain	See cases [RCV000136943]	Chr5:22149..15851376 [GRCh38] Chr5:22149..15851485 [GRCh37] Chr5:75149..15904485 [NCBI36] Chr5:5p15.33-15.1	pathogenic
GRCh38/hg38 5p15.33-14.3(chr5:22149-21217120)x1	copy number loss	See cases [RCV000138553]	Chr5:22149..21217120 [GRCh38] Chr5:22149..21217229 [GRCh37] Chr5:75149..21252986 [NCBI36] Chr5:5p15.33-14.3	pathogenic
GRCh38/hg38 5p15.33-15.2(chr5:113461-14684362)x1	copy number loss	See cases [RCV000142183]	Chr5:113461..14684362 [GRCh38] Chr5:113576..14684471 [GRCh37] Chr5:166576..14737471 [NCBI36] Chr5:5p15.33-15.2	pathogenic
GRCh38/hg38 5p15.33-13.2(chr5:22149-35831538)x1	copy number loss	See cases [RCV000138888]	Chr5:22149..35831538 [GRCh38] Chr5:22149..35831640 [GRCh37] Chr5:75149..35867397 [NCBI36] Chr5:5p15.33-13.2	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-1278576)x3	copy number gain	See cases [RCV000135393]	Chr5:22149..1278576 [GRCh38] Chr5:22149..1278691 [GRCh37] Chr5:75149..1331691 [NCBI36] Chr5:5p15.33	uncertain significance
GRCh38/hg38 5p15.33-15.32(chr5:22149-5102586)x1	copy number loss	See cases [RCV000143332]	Chr5:22149..5102586 [GRCh38] Chr5:22149..5102699 [GRCh37] Chr5:75149..5155699 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33-12(chr5:54839-45649861)x3	copy number gain	See cases [RCV000051810]	Chr5:54839..45649861 [GRCh38] Chr5:54954..45649963 [GRCh37] Chr5:107954..45685720 [NCBI36] Chr5:5p15.33-12	pathogenic
GRCh38/hg38 5p15.33-15.1(chr5:22149-16930016)x1	copy number loss	See cases [RCV000140964]	Chr5:22149..16930016 [GRCh38] Chr5:22149..16930125 [GRCh37] Chr5:75149..16983125 [NCBI36] Chr5:5p15.33-15.1	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-28589192)x1	copy number loss	See cases [RCV000141225]	Chr5:22149..28589192 [GRCh38] Chr5:22149..28589299 [GRCh37] Chr5:75149..28625056 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-26593891)x1	copy number loss	See cases [RCV000142645]	Chr5:22149..26593891 [GRCh38] Chr5:22149..26594000 [GRCh37] Chr5:75149..26629757 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-11(chr5:49978-46114984)x3	copy number gain	See cases [RCV000135453]	Chr5:49978..46114984 [GRCh38] Chr5:50093..46115086 [GRCh37] Chr5:103093..46150843 [NCBI36] Chr5:5p15.33-11	pathogenic
GRCh38/hg38 5p15.33-14.3(chr5:22149-22775295)x1	copy number loss	See cases [RCV000138116]	Chr5:22149..22775295 [GRCh38] Chr5:22149..22775404 [GRCh37] Chr5:75149..22811161 [NCBI36] Chr5:5p15.33-14.3	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:113461-6243977)x1	copy number loss	See cases [RCV000141898]	Chr5:113461..6243977 [GRCh38] Chr5:113576..6244090 [GRCh37] Chr5:166576..6297090 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-25699605)x1	copy number loss	See cases [RCV000133768]	Chr5:22149..25699605 [GRCh38] Chr5:22149..25699714 [GRCh37] Chr5:75149..25735471 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-15.1(chr5:22149-16584575)x1	copy number loss	See cases [RCV000136556]	Chr5:22149..16584575 [GRCh38] Chr5:22149..16584684 [GRCh37] Chr5:75149..16637684 [NCBI36] Chr5:5p15.33-15.1	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-28429241)x1	copy number loss	See cases [RCV000137165]	Chr5:22149..28429241 [GRCh38] Chr5:22149..28429348 [GRCh37] Chr5:75149..28465105 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-14.3(chr5:22149-23132046)x1	copy number loss	See cases [RCV000053398]	Chr5:22149..23132046 [GRCh38] Chr5:22149..23132155 [GRCh37] Chr5:75149..23167912 [NCBI36] Chr5:5p15.33-14.3	pathogenic
GRCh38/hg38 5p15.33-15.1(chr5:49778-16908798)x1	copy number loss	See cases [RCV000053422]	Chr5:49778..16908798 [GRCh38] Chr5:49893..16908907 [GRCh37] Chr5:102893..16961907 [NCBI36] Chr5:5p15.33-15.1	pathogenic
GRCh38/hg38 5p15.33-q13.3(chr5:22149-74412725)x3	copy number gain	See cases [RCV000138780]	Chr5:22149..74412725 [GRCh38] Chr5:22149..73708550 [GRCh37] Chr5:75149..73744306 [NCBI36] Chr5:5p15.33-q13.3	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-27788616)x1	copy number loss	See cases [RCV000134873]	Chr5:22149..27788616 [GRCh38] Chr5:22149..27788723 [GRCh37] Chr5:75149..27824480 [NCBI36] Chr5:5p15.33-14.1	pathogenic
GRCh38/hg38 5p15.33-15.2(chr5:22149-11429258)x1	copy number loss	See cases [RCV000137884]	Chr5:22149..11429258 [GRCh38] Chr5:22149..11429370 [GRCh37] Chr5:75149..11482370 [NCBI36] Chr5:5p15.33-15.2	pathogenic
GRCh38/hg38 5p15.33-15.1(chr5:49978-15678451)x1	copy number loss	See cases [RCV000148250]	Chr5:49978..15678451 [GRCh38] Chr5:50093..15678560 [GRCh37] Chr5:103093..15731560 [NCBI36] Chr5:5p15.33-15.1	pathogenic
GRCh38/hg38 5p15.33-14.3(chr5:22149-21726360)x1	copy number loss	See cases [RCV000143022]	Chr5:22149..21726360 [GRCh38] Chr5:22149..21726469 [GRCh37] Chr5:75149..21762226 [NCBI36] Chr5:5p15.33-14.3	pathogenic
GRCh38/hg38 5p15.33-15.2(chr5:22149-12004091)x1	copy number loss	See cases [RCV000053399]	Chr5:22149..12004091 [GRCh38] Chr5:22149..12004203 [GRCh37] Chr5:75149..12057203 [NCBI36] Chr5:5p15.33-15.2	pathogenic
GRCh38/hg38 5p15.33-14.1(chr5:22149-28075106)x3	copy number gain	See cases [RCV000137682]	Chr5:22149..28075106 [GRCh38] Chr5:22149..28075213 [GRCh37] Chr5:75149..28110970 [NCBI36] Chr5:5p15.33-14.1	pathogenic\|uncertain significance
GRCh38/hg38 5p15.33-14.3(chr5:49778-19125522)x1	copy number loss	See cases [RCV000053424]	Chr5:49778..19125522 [GRCh38] Chr5:49893..19125631 [GRCh37] Chr5:102893..19161388 [NCBI36] Chr5:5p15.33-14.3	pathogenic
GRCh38/hg38 5p15.33-13.2(chr5:113461-33998289)x1	copy number loss	See cases [RCV000141844]	Chr5:113461..33998289 [GRCh38] Chr5:113576..33998394 [GRCh37] Chr5:166576..34034151 [NCBI36] Chr5:5p15.33-13.2	pathogenic
GRCh38/hg38 5p15.33-15.31(chr5:49778-8872509)x3	copy number gain	See cases [RCV000051809]	Chr5:49778..8872509 [GRCh38] Chr5:49893..8872621 [GRCh37] Chr5:102893..8925621 [NCBI36] Chr5:5p15.33-15.31	pathogenic
GRCh38/hg38 5p15.33-15.31(chr5:22149-7213275)x1	copy number loss	See cases [RCV000053397]	Chr5:22149..7213275 [GRCh38] Chr5:22149..7213388 [GRCh37] Chr5:75149..7266388 [NCBI36] Chr5:5p15.33-15.31	pathogenic
GRCh38/hg38 5p15.33-15.2(chr5:22149-10044087)x1	copy number loss	See cases [RCV000053416]	Chr5:22149..10044087 [GRCh38] Chr5:22149..10044199 [GRCh37] Chr5:75149..10097199 [NCBI36] Chr5:5p15.33-15.2	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:49778-4768868)x1	copy number loss	See cases [RCV000053423]	Chr5:49778..4768868 [GRCh38] Chr5:49893..4768981 [GRCh37] Chr5:102893..4821981 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33-15.31(chr5:21949-8872509)x3	copy number gain	See cases [RCV000051808]	Chr5:21949..8872509 [GRCh38] Chr5:21949..8872621 [GRCh37] Chr5:74949..8925621 [NCBI36] Chr5:5p15.33-15.31	pathogenic
GRCh38/hg38 5p15.33(chr5:37694-2913205)x1	copy number loss	See cases [RCV000053421]	Chr5:37694..2913205 [GRCh38] Chr5:37692..2913319 [GRCh37] Chr5:90692..2966319 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-1429599)x1	copy number loss	See cases [RCV000136900]	Chr5:22149..1429599 [GRCh38] Chr5:22149..1429714 [GRCh37] Chr5:75149..1482714 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-4260151)x1	copy number loss	See cases [RCV000137942]	Chr5:22149..4260151 [GRCh38] Chr5:22149..4260264 [GRCh37] Chr5:75149..4313264 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:95128-5834551)x1	copy number loss	See cases [RCV000142697]	Chr5:95128..5834551 [GRCh38] Chr5:95243..5834664 [GRCh37] Chr5:148243..5887664 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33(chr5:22149-1826256)x1	copy number loss	See cases [RCV000050655]	Chr5:22149..1826256 [GRCh38] Chr5:22149..1826370 [GRCh37] Chr5:75149..1879370 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33(chr5:37694-2746908)x1	copy number loss	See cases [RCV000053420]	Chr5:37694..2746908 [GRCh38] Chr5:37692..2747022 [GRCh37] Chr5:90692..2800022 [NCBI36] Chr5:5p15.33	pathogenic
GRCh38/hg38 5p15.33-15.2(chr5:22149-12819999)x1	copy number loss	See cases [RCV000133796]	Chr5:22149..12819999 [GRCh38] Chr5:22149..12820111 [GRCh37] Chr5:75149..12873111 [NCBI36] Chr5:5p15.33-15.2	pathogenic
GRCh38/hg38 5p15.33-15.32(chr5:22149-4833626)x1	copy number loss	See cases [RCV000141244]	Chr5:22149..4833626 [GRCh38] Chr5:22149..4833739 [GRCh37] Chr5:75149..4886739 [NCBI36] Chr5:5p15.33-15.32	pathogenic
GRCh38/hg38 5p15.33(chr5:924086-1544344)x3	copy number gain	See cases [RCV000135933]	Chr5:924086..1544344 [GRCh38] Chr5:924201..1544459 [GRCh37] Chr5:977201..1597459 [NCBI36] Chr5:5p15.33	uncertain significance
GRCh38/hg38 5p15.33(chr5:965217-1528677)x3	copy number gain	See cases [RCV000139630]	Chr5:965217..1528677 [GRCh38] Chr5:965332..1528792 [GRCh37] Chr5:1018332..1581792 [NCBI36] Chr5:5p15.33	likely benign
GRCh38/hg38 5p15.33-15.2(chr5:9999-14320000)x1	copy number loss	Micrognathia-recurrent infections-behavioral abnormalities-mild intellectual disability syndrome [RCV003327718]	Chr5:9999..14320000 [GRCh38] Chr5:5p15.33-15.2	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	878
Count of miRNA genes:	573
Interacting mature miRNAs:	655
Transcripts:	ENST00000505972, ENST00000512572, ENST00000514376
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

202

155

Low

953

477

824

285

269

219

762

425

537

174

627

630

488

462

Below cutoff

1162

1400

514

110

434

2355

1171

1994

109

415

575

555

1453

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_109911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK091791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK097569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC032469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA988334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	R02194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000505972

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	1,175,957 - 1,178,546 (-)	Ensembl

RefSeq Acc Id:

ENST00000512572

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	1,175,397 - 1,178,594 (-)	Ensembl

RefSeq Acc Id:

ENST00000514376

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	1,173,141 - 1,178,605 (-)	Ensembl

RefSeq Acc Id:

NR_109911

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	1,173,096 - 1,178,605 (-)	NCBI
T2T-CHM13v2.0	5	1,079,578 - 1,085,087 (-)	NCBI

Sequence:

show sequence

ACAAACACACACAGGCCTGAGCTCCGGATATTTCTCCTGTTCTGGAGACAGTGAGAAGTGAAAG
AGAAATGGCTGCCCCTGCACCACTTACCGCGAAGGAGGCTCAAGGCTGGGGGGCCCCTCTGCCT
TCCAGTGACCGCCCGTGTCACATCCTGACCCGCTCAGCAGGAGAACACAGCAGGTCCCTCCGAC
CGCAGTCGGCCTCTCCAGCCTGCCATGCCTCTGGCCATGAGGCGACCCGCTGGAGTGATGGATT
CCCGTCACTACCACCCACAGGGCGAGGGGGTGCATTGGTCTGCTTGGGCCGCTGTAACAAAATG
CCACAGCCTGGATGAGTGACTGACATTGCTTCCCCACCGTTCTGGAGGCTGGAGGCCCGAGATC
GAGGTCCCTGACACTATTTCAGTGATGCCAGAGCCCAGGAGGAGTCGACCAAGCCCCAGCGTGG
CCATAAGCACCTTCGCAGGACCACGGAGTCGCTGCAGGTGTTCAGCCCTGTTGAGAGTGGGAGT
CGGTGTCGATGGTCACAGCTCAGTAACTCATCGTCACCAGCGAGTACCACAGAGCAGACACAAC
TGCACTTCTCTGTAGAGCCTCCAGTCGATACTGAGAGCCACTGGGGCGTCTGACACCCAAGGGT
GCAGACATTCACTCCAAGTCCAGAGACCGCGCCCTTTCTAAGGCCCTGTCTCACAGTCGCCCCG
TGCTCATTGTGCCGGATGTTTCCACAGCCACAGAGACGGTGCGTGAAGGTGAGGTGCAGCCTAG
TGCATATGACTGACAGAAACGTGAAGCCACAGTGGACGCCTGGATGAGACACAGATCACCTTCC
AAATCTGAGTGTGGCCTTGGGACCAACCAGGCAGCCAGGGAGAAGGCAGAGACCAGAGGGAACC
CAGGTGCCCTCAATCCCAGCCTCCTCTATCCCAGCCTCCCAATCCCAGCCTCCCCAATCCCAGC
CTCCTAATCCCAGCCTCCTCCATCCCAGGACCCCCACTCCCAGCCTCCCGATCCCAGCTTCTCT
GATCCCAGCCTCCCCTAAAACCCAGACTCTATGAATCCCAGCCTCTGAGGTGGGAACTGTTAGT
AACCCCACTCCATGGACAAGAAAGCTGGGGCCTGGCGAGGCTAACAGACTATCCTGATGGTGTG
AGGGAGGGATCGGCCTCTGAGGGCTGCTTCCACCCATCTCACCAGTGGCTGCAGGCTCCAGGCG
CCACTTTCCTTGAGTCTATGTTCTTTCCAAGCATCCTGCAGCTCCAGAAGCTCTGGAGCCGCCA
GCACTGAGAGAAGCGATGGAGCTGCATGCAGGGAAACTTTGTTGACAGCGGTGTCTGGATGGAC
CAGCAGAGGGCACTCTCACCCACGGGGAAAATCGTGCGCCCGGCCTCGTCCACCGCCAGAAGAC
GCCGCTACACAATGGAGTCTCGCTCTGTCGACCAGGCTGGAGTGCAATGGTGCGATCTCGGCTC
ACTGCAATCTCTGCCTCCCGGTGAGAGGTGAAGCCAGCTGGACTTCCTGGGTCTAGTGGGGACT
TGGAGAACTTTTCTGTCTAGCTAAAGATTTGTAAATGCACCAATCAGTGCTGTGTCTAGCTAAA
GTTTGTAAACGTACCAATCAGCACTCTGTAAAAATGGGCCAATCAGCACTCTGTAAAATGGACC
AATCAGCACTCTGTAAAATGGACCAGTCAGCAGGATGTGGGCGGGGTCAAATAAAGGAATAAAA
AGCTGGTAGCCGAGCCGGCAGTGGCAAACCGTTTGGGTCCTTCTCGGTACCCTGGTGGCTTTGT
TGTTTTGCTC

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Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	TERLR1	COSMIC
Ensembl Genes	ENSG00000249201	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000514376	ENTREZGENE
GTEx	ENSG00000249201	GTEx
HGNC ID	HGNC:52952	ENTREZGENE
Human Proteome Map	TERLR1	Human Proteome Map
NCBI Gene	CTD-3080P12.3	ENTREZGENE
RNAcentral	URS000075BF13	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-12-06	TERLR1	TERT regulating lncRNA 1	CTD-3080P12.3	uncharacterized LOC101928857	Symbol and/or name change	19259463	PROVISIONAL
2020-08-20	CTD-3080P12.3	uncharacterized LOC101928857	AC114291.1	novel transcript	Symbol and/or name change	19259462	PROVISIONAL
2020-06-25	AC114291.1	novel transcript	CTD-3080P12.3	uncharacterized LOC101928857	Symbol and/or name change	19259462	PROVISIONAL
2020-06-18	CTD-3080P12.3	uncharacterized LOC101928857	AC114291.1	novel transcript	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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