LOC124900778 (uncharacterized LOC124900778) - Rat Genome Database

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Gene: LOC124900778 (uncharacterized LOC124900778) Homo sapiens
Analyze
Symbol: LOC124900778 (Ensembl: AC078850.1)
Name: uncharacterized LOC124900778 (Ensembl:novel transcript)
RGD ID: 16558071
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AC078850.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384128,567,933 - 128,570,543 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4128,567,972 - 128,570,531 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map4q28.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:87
Interacting mature miRNAs:88
Transcripts:ENST00000514265
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 20 50 4 2 9 2 74 23 16 9 2 8 62 33
Low 828 858 480 132 363 31 1531 586 313 101 173 656 103 764 925 3
Below cutoff 1062 1362 881 253 627 194 2098 1058 1450 245 915 725 61 329 1380

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_007058268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC078850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000514265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4128,567,972 - 128,570,531 (-)Ensembl
RefSeq Acc Id: XR_007058268
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384128,567,933 - 128,570,543 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124900778 COSMIC
Ensembl Genes ENSG00000248187 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000514265 ENTREZGENE
GTEx ENSG00000248187 GTEx
Human Proteome Map LOC124900778 Human Proteome Map
NCBI Gene LOC124900778 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124900778  uncharacterized LOC124900778  AC078850.1  novel transcript  Symbol and/or name change 5135510 APPROVED