AC007359.1 (novel transcript) - Rat Genome Database

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Gene: AC007359.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC007359.1
Name: novel transcript
RGD ID: 16556699
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: LOC102725532; uncharacterized LOC102725532
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y22,101,692 - 22,147,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY22,100,814 - 22,147,484 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic MapYq11.223NCBI
T2T-CHM13v2.0Y23,274,573 - 23,320,349 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:369
Count of miRNA genes:334
Interacting mature miRNAs:348
Transcripts:ENST00000417910, ENST00000419158
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 1 3 1
Below cutoff 9 6 8 5 12 3 5 15 18 13 2 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000417910
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY22,100,814 - 22,105,869 (-)Ensembl
RefSeq Acc Id: ENST00000419158
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY22,101,692 - 22,147,484 (-)Ensembl
RefSeq Acc Id: XR_001756092
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38Y22,101,692 - 22,147,540 (-)NCBI
Sequence:
RefSeq Acc Id: XR_008485538
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0Y23,274,573 - 23,320,349 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC AC007359.1 COSMIC
Ensembl Genes ENSG00000236951 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000419158 ENTREZGENE
GTEx ENSG00000236951 GTEx
Human Proteome Map AC007359.1 Human Proteome Map
NCBI Gene LOC102725532 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC007359.1  novel transcript  LOC102725532  uncharacterized LOC102725532  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102725532  uncharacterized LOC102725532  AC007359.1  novel transcript  Symbol and/or name change 5135510 APPROVED
2020-04-30 AC007359.1  novel transcript  AC007359.1  uncharacterized LOC102725532  Symbol and/or name change 19259462 PROVISIONAL