DPH5-DT (DPH5 divergent transcript) - Rat Genome Database

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Gene: DPH5-DT (DPH5 divergent transcript) Homo sapiens
Analyze
Symbol: DPH5-DT
Name: DPH5 divergent transcript
RGD ID: 16555549
HGNC Page HGNC:53720
Description: INTERACTS WITH lead(0)
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC093157.1; LOC102606465; uncharacterized LOC102606465
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381101,025,846 - 101,087,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1101,025,844 - 101,090,513 (+)EnsemblGRCh38hg38GRCh38
GRCh371101,491,402 - 101,552,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p21.2NCBI
CHM1_11101,607,233 - 101,668,768 (+)NCBICHM1_1
T2T-CHM13v2.01100,874,686 - 100,936,227 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
lead(0)  (EXP)

References
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:14702039   PMID:16344560   PMID:20195266   PMID:23459443   PMID:28854954  


Genomics

Variants

.
Variants in DPH5-DT
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 copy number loss See cases [RCV000135333] Chr1:97272349..108893138 [GRCh38]
Chr1:97737905..109435760 [GRCh37]
Chr1:97510493..109237283 [NCBI36]
Chr1:1p21.3-13.3		 pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 copy number loss See cases [RCV000053877] Chr1:97410602..110670510 [GRCh38]
Chr1:97876158..111213132 [GRCh37]
Chr1:97648746..111014655 [NCBI36]
Chr1:1p21.3-13.3		 pathogenic
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3 copy number gain See cases [RCV000135654] Chr1:83457325..104273917 [GRCh38]
Chr1:83923008..104816539 [GRCh37]
Chr1:83695596..104618062 [NCBI36]
Chr1:1p31.1-21.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:864
Count of miRNA genes:608
Interacting mature miRNAs:663
Transcripts:ENST00000416329, ENST00000446527, ENST00000449473, ENST00000451213, ENST00000453011, ENST00000454721, ENST00000593496
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 64 66 413 17 545 15 56 56 256 28 489 253 2 59 24
Low 2368 2852 1310 605 1341 449 4282 2120 3450 388 960 1355 168 1144 2748 4
Below cutoff 65 61 17 17 2 2 1 16

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000416329
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,063,611 - 101,083,483 (+)Ensembl
RefSeq Acc Id: ENST00000446527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,854 - 101,087,268 (+)Ensembl
RefSeq Acc Id: ENST00000449473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,072,660 - 101,087,268 (+)Ensembl
RefSeq Acc Id: ENST00000451213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,844 - 101,087,261 (+)Ensembl
RefSeq Acc Id: ENST00000453011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,878 - 101,080,562 (+)Ensembl
RefSeq Acc Id: ENST00000454721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,850 - 101,087,268 (+)Ensembl
RefSeq Acc Id: ENST00000654544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,887 - 101,087,211 (+)Ensembl
RefSeq Acc Id: ENST00000654574
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,844 - 101,087,269 (+)Ensembl
RefSeq Acc Id: ENST00000655226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,890 - 101,087,193 (+)Ensembl
RefSeq Acc Id: ENST00000656047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,887 - 101,085,987 (+)Ensembl
RefSeq Acc Id: ENST00000656060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,265 (+)Ensembl
RefSeq Acc Id: ENST00000656224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,268 (+)Ensembl
RefSeq Acc Id: ENST00000656671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,907 - 101,027,130 (+)Ensembl
RefSeq Acc Id: ENST00000658370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,907 - 101,087,268 (+)Ensembl
RefSeq Acc Id: ENST00000659528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,846 - 101,090,513 (+)Ensembl
RefSeq Acc Id: ENST00000663958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,850 - 101,087,248 (+)Ensembl
RefSeq Acc Id: ENST00000664684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,869 - 101,087,265 (+)Ensembl
RefSeq Acc Id: ENST00000666646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,910 - 101,087,216 (+)Ensembl
RefSeq Acc Id: ENST00000666988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,063,601 - 101,087,124 (+)Ensembl
RefSeq Acc Id: ENST00000669687
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,951 - 101,085,705 (+)Ensembl
RefSeq Acc Id: ENST00000687494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,265 (+)Ensembl
RefSeq Acc Id: ENST00000687560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,855 - 101,087,269 (+)Ensembl
RefSeq Acc Id: ENST00000702986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,894 - 101,087,265 (+)Ensembl
RefSeq Acc Id: ENST00000703091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,846 - 101,087,265 (+)Ensembl
RefSeq Acc Id: NR_109849
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381101,025,846 - 101,087,379 (+)NCBI
T2T-CHM13v2.01100,874,686 - 100,936,227 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC DPH5-DT COSMIC
Ensembl Genes ENSG00000233184 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000446527 ENTREZGENE
GTEx ENSG00000233184 GTEx
HGNC ID HGNC:53720 ENTREZGENE
Human Proteome Map DPH5-DT Human Proteome Map
NCBI Gene LOC102606465 ENTREZGENE
RNAcentral URS0000759A5E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-01-10 DPH5-DT  DPH5 divergent transcript  AC093157.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC093157.1  novel transcript  LOC102606465  uncharacterized LOC102606465  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102606465  uncharacterized LOC102606465  AC093157.1  novel transcript  Symbol and/or name change 5135510 APPROVED