DPH5-DT (DPH5 divergent transcript) - Rat Genome Database

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Gene: DPH5-DT (DPH5 divergent transcript) Homo sapiens
Analyze
Symbol: DPH5-DT
Name: DPH5 divergent transcript
RGD ID: 16555549
HGNC Page HGNC:53720
Description: INTERACTS WITH lead(0)
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC093157.1; LOC102606465; uncharacterized LOC102606465
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381101,025,846 - 101,087,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1101,025,825 - 101,090,513 (+)EnsemblGRCh38hg38GRCh38
GRCh371101,491,402 - 101,552,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p21.2NCBI
CHM1_11101,607,233 - 101,668,768 (+)NCBICHM1_1
T2T-CHM13v2.01100,874,686 - 100,936,227 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DPH5-DTHumanlead(0) decreases expressionEXP 6480464Lead results in decreased expression of DPH5-DT mRNACTDPMID:37386098

PMID:8889548   PMID:12477932   PMID:14702039   PMID:16344560   PMID:20195266   PMID:23459443   PMID:28854954  



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Variants in DPH5-DT
1 total Variants

1 to 3 of 3 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 copy number loss See cases [RCV000135333] Chr1:97272349..108893138 [GRCh38]
Chr1:97737905..109435760 [GRCh37]
Chr1:97510493..109237283 [NCBI36]
Chr1:1p21.3-13.3		 pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 copy number loss See cases [RCV000053877] Chr1:97410602..110670510 [GRCh38]
Chr1:97876158..111213132 [GRCh37]
Chr1:97648746..111014655 [NCBI36]
Chr1:1p21.3-13.3		 pathogenic
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3 copy number gain See cases [RCV000135654] Chr1:83457325..104273917 [GRCh38]
Chr1:83923008..104816539 [GRCh37]
Chr1:83695596..104618062 [NCBI36]
Chr1:1p31.1-21.1		 pathogenic
1 to 3 of 3 rows

Predicted Target Of
Summary Value
Count of predictions:864
Count of miRNA genes:608
Interacting mature miRNAs:663
Transcripts:ENST00000416329, ENST00000446527, ENST00000449473, ENST00000451213, ENST00000453011, ENST00000454721, ENST00000593496
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2432 2788 2245 4942 1723 2345 4 622 1947 464 2268 7280 6453 52 3708 847 1732 1612 170



Ensembl Acc Id: ENST00000416329
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,063,611 - 101,083,483 (+)Ensembl
Ensembl Acc Id: ENST00000446527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,853 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000449473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,072,660 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000451213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,844 - 101,087,261 (+)Ensembl
Ensembl Acc Id: ENST00000453011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,878 - 101,080,562 (+)Ensembl
Ensembl Acc Id: ENST00000454721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,844 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000654544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,887 - 101,087,211 (+)Ensembl
Ensembl Acc Id: ENST00000654574
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,825 - 101,087,387 (+)Ensembl
Ensembl Acc Id: ENST00000655226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,890 - 101,087,193 (+)Ensembl
Ensembl Acc Id: ENST00000656047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,887 - 101,085,987 (+)Ensembl
Ensembl Acc Id: ENST00000656060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,265 (+)Ensembl
Ensembl Acc Id: ENST00000656224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,844 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000656671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,887 - 101,027,130 (+)Ensembl
Ensembl Acc Id: ENST00000658370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,907 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000659528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,839 - 101,090,513 (+)Ensembl
Ensembl Acc Id: ENST00000663958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,850 - 101,087,248 (+)Ensembl
Ensembl Acc Id: ENST00000664684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,869 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000666646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,910 - 101,087,216 (+)Ensembl
Ensembl Acc Id: ENST00000666988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,063,601 - 101,087,124 (+)Ensembl
Ensembl Acc Id: ENST00000669687
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,951 - 101,085,705 (+)Ensembl
Ensembl Acc Id: ENST00000687494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000687560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,839 - 101,087,269 (+)Ensembl
Ensembl Acc Id: ENST00000702986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,856 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000703091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,846 - 101,087,265 (+)Ensembl
Ensembl Acc Id: ENST00000719302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,853 - 101,087,270 (+)Ensembl
Ensembl Acc Id: ENST00000719303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,858 - 101,087,268 (+)Ensembl
Ensembl Acc Id: ENST00000719304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,265 (+)Ensembl
Ensembl Acc Id: ENST00000719305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,857 - 101,087,265 (+)Ensembl
Ensembl Acc Id: ENST00000719306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,887 - 101,087,269 (+)Ensembl
Ensembl Acc Id: ENST00000719307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,898 - 101,087,266 (+)Ensembl
Ensembl Acc Id: ENST00000719308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,025,907 - 101,075,435 (+)Ensembl
Ensembl Acc Id: ENST00000719309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,063,612 - 101,087,265 (+)Ensembl
RefSeq Acc Id: NR_109849
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381101,025,846 - 101,087,379 (+)NCBI
T2T-CHM13v2.01100,874,686 - 100,936,227 (+)NCBI
Sequence:


1 to 31 of 31 rows
Database
Acc Id
Source(s)
COSMIC DPH5-DT COSMIC
Ensembl Genes ENSG00000233184 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000446527 ENTREZGENE
GTEx ENSG00000233184 GTEx
HGNC ID HGNC:53720 ENTREZGENE
Human Proteome Map DPH5-DT Human Proteome Map
NCBI Gene LOC102606465 ENTREZGENE
RNAcentral URS000019EFB1 RNACentral
  URS00004893CF RNACentral
  URS0000759A5E RNACentral
  URS00007755D0 RNACentral
  URS0000EED644 RNACentral
  URS0000EEDB9A RNACentral
  URS0000EEDCA7 RNACentral
  URS0000EEDED7 RNACentral
  URS0000EEF4B3 RNACentral
  URS0000EEFBBA RNACentral
  URS0000EEFEB9 RNACentral
  URS0000EF30CE RNACentral
  URS0000EF3581 RNACentral
  URS0000EF44F4 RNACentral
  URS0000EF4DA8 RNACentral
  URS00022AE910 RNACentral
  URS00022B21FE RNACentral
  URS00022B5655 RNACentral
  URS00025E54FC RNACentral
  URS00025E78F6 RNACentral
  URS00025EEBE6 RNACentral
  URS00025EF9F6 RNACentral
  URS00025F1B92 RNACentral
  URS00025F6099 RNACentral
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-01-10 DPH5-DT  DPH5 divergent transcript  AC093157.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC093157.1  novel transcript  LOC102606465  uncharacterized LOC102606465  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102606465  uncharacterized LOC102606465  AC093157.1  novel transcript  Symbol and/or name change 5135510 APPROVED