AC092098.1 (eukaryotic translation initiation factor 3, subunit I (EIF3I) pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: AC092098.1 (eukaryotic translation initiation factor 3, subunit I (EIF3I) pseudogene) Homo sapiens
Analyze
Symbol: AC092098.1
Name: eukaryotic translation initiation factor 3, subunit I (EIF3I) pseudogene
RGD ID: 16554746
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: eukaryotic translation initiation factor 3 subunit I pseudogene; LOC648442
Related Functional Gene: EIF3I  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387118,950,349 - 118,951,258 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7118,950,386 - 118,951,259 (-)EnsemblGRCh38hg38GRCh38
GRCh377118,590,403 - 118,591,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q31.31NCBI
HuRef7112,957,094 - 112,957,973 (-)NCBIHuRef
CHM1_17118,524,570 - 118,525,449 (-)NCBICHM1_1
T2T-CHM13v2.07120,265,721 - 120,266,630 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:138
Interacting mature miRNAs:141
Transcripts:ENST00000429245
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 7 1 3 2
Below cutoff 31 19 20 10 36 6 54 17 33 10 87 24 4 14 31

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000429245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7118,950,386 - 118,951,259 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC092098.1 COSMIC
Ensembl Genes ENSG00000230520 Ensembl, ENTREZGENE
GTEx ENSG00000230520 GTEx
Human Proteome Map AC092098.1 Human Proteome Map
NCBI Gene LOC648442 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC092098.1  eukaryotic translation initiation factor 3, subunit I (EIF3I) pseudogene  LOC648442  eukaryotic translation initiation factor 3 subunit I pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC648442  eukaryotic translation initiation factor 3 subunit I pseudogene  AC092098.1  eukaryotic translation initiation factor 3, subunit I (EIF3I) pseudogene  Symbol and/or name change 5135510 APPROVED