SSBP3P3 (SSBP3 pseudogene 3) - Rat Genome Database

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Gene: SSBP3P3 (SSBP3 pseudogene 3) Homo sapiens
Analyze
Symbol: SSBP3P3 (Ensembl: AP000533.1)
Name: SSBP3 pseudogene 3 (Ensembl:single stranded DNA binding protein 3 (SSBP3) pseudogene)
RGD ID: 16552064
HGNC Page HGNC:56966
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AP000533.1; LOC100132723; single stranded DNA binding protein 3 (SSBP3) pseudogene; single stranded DNA binding protein 4 pseudogene
Related Functional Gene: SSBP4  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382215,572,087 - 15,573,263 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2215,572,089 - 15,573,265 (-)EnsemblGRCh38hg38GRCh38
GRCh372216,404,700 - 16,405,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q11.1NCBI
CHM1_12216,406,066 - 16,407,242 (+)NCBICHM1_1
T2T-CHM13v2.02216,146,100 - 16,147,277 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:229
Interacting mature miRNAs:241
Transcripts:ENST00000456143
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 37 1
Below cutoff 66 99 33 7 47 5 140 48 120 10 303 38 2 36 95

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000456143
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2215,572,089 - 15,573,265 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SSBP3P3 COSMIC
Ensembl Genes ENSG00000213727 Ensembl, ENTREZGENE
GTEx ENSG00000213727 GTEx
HGNC ID HGNC:56966 ENTREZGENE
Human Proteome Map SSBP3P3 Human Proteome Map
NCBI Gene LOC100132723 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-12-18 SSBP3P3  SSBP3 pseudogene 3  AP000533.1  single stranded DNA binding protein 3 (SSBP3) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AP000533.1  single stranded DNA binding protein 3 (SSBP3) pseudogene  LOC100132723  single stranded DNA binding protein 4 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100132723  single stranded DNA binding protein 4 pseudogene  AP000533.1  single stranded DNA binding protein 3 (SSBP3) pseudogene  Symbol and/or name change 5135510 APPROVED