LOC124900285 (uncharacterized LOC124900285) - Rat Genome Database

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Gene: LOC124900285 (uncharacterized LOC124900285) Homo sapiens
Analyze
Symbol: LOC124900285 (Ensembl: AL136367.1)
Name: uncharacterized LOC124900285
RGD ID: 16551895
Description:
Type: pseudo (Ensembl: snoRNA)
RefSeq Status: MODEL
Previously known as: AL136367.1; small nucleolar RNA SNORA26
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38987,260,450 - 87,260,585 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl987,260,450 - 87,260,585 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map9q21.33NCBI
T2T-CHM13v2.0999,413,843 - 99,413,978 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC124900285
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38987,260,450 - 87,260,585 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl987,260,450 - 87,260,585 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map9q21.33NCBI
T2T-CHM13v2.0999,413,843 - 99,413,978 (+)NCBIT2T-CHM13v2.0
Gm24233
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,180,858 - 59,180,979 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,180,858 - 59,180,979 (+)EnsemblGRCm39 Ensembl
GRCm381259,134,072 - 59,134,193 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,134,072 - 59,134,193 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
LOC120099029
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,918,251 - 5,918,376 (-)NCBIGRCr8
mRatBN7.2205,916,482 - 5,916,607 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,916,482 - 5,916,607 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl207,437,421 - 7,437,545 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:107
Interacting mature miRNAs:110
Transcripts:ENST00000391119
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
120 83 226 114 391 117 76 2 25 51 17 363 277 327 6 128 33 222 57 10

Sequence

Nucleotide Sequences
GenBank Nucleotide AL136367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000391119
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl987,260,450 - 87,260,585 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC LOC124900285 COSMIC
Ensembl Genes ENSG00000212421 Ensembl, ENTREZGENE
GTEx ENSG00000212421 GTEx
Human Proteome Map LOC124900285 Human Proteome Map
NCBI Gene LOC124900285 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-18 LOC124900285  uncharacterized LOC124900285  LOC124900285  small nucleolar RNA SNORA26  Symbol and/or name change 5135510 APPROVED
2022-04-12 LOC124900285  small nucleolar RNA SNORA26  AL136367.1    Symbol and/or name change 5135510 APPROVED