LOC124903256 (small nucleolar RNA SNORA16B/SNORA16A family) - Rat Genome Database

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Gene: LOC124903256 (small nucleolar RNA SNORA16B/SNORA16A family) Homo sapiens
Analyze
Symbol: LOC124903256 (Ensembl: AL137247.1)
Name: small nucleolar RNA SNORA16B/SNORA16A family
RGD ID: 16551873
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AL137247.1
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381332,420,390 - 32,420,516 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1332,420,390 - 32,420,516 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map13q13.1NCBI
T2T-CHM13v2.01331,637,634 - 31,637,760 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC124903256
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381332,420,390 - 32,420,516 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1332,420,390 - 32,420,516 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map13q13.1NCBI
T2T-CHM13v2.01331,637,634 - 31,637,760 (-)NCBIT2T-CHM13v2.0
LOC119866037
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha257,737,950 - 7,738,078 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0257,804,426 - 7,804,554 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1257,704,368 - 7,704,496 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,702,626 - 7,702,754 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,759,924 - 7,760,052 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:135
Interacting mature miRNAs:138
Transcripts:ENST00000390991
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage entire extraembryonic component
High
Medium 4 1 53 49 132 49 2 5 10 10 6
Low 120 11 163 119 210 121 142 40 91 180 159 232 3 1 2
Below cutoff 12 23 12 9 12 9 12 11 25 22 27 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000390991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1332,420,390 - 32,420,516 (-)Ensembl
RefSeq Acc Id: XR_007063951
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381332,420,390 - 32,420,516 (-)NCBI
RefSeq Acc Id: XR_007084204
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01331,637,634 - 31,637,760 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124903256 COSMIC
Ensembl Genes ENSG00000212293 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000390991 ENTREZGENE
GTEx ENSG00000212293 GTEx
Human Proteome Map LOC124903256 Human Proteome Map
NCBI Gene LOC124903256 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124903256  small nucleolar RNA SNORA16B/SNORA16A family  AL137247.1    Symbol and/or name change 5135510 APPROVED