RNVU1-30 (RNA, variant U1 small nuclear 30) - Rat Genome Database

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Gene: RNVU1-30 (RNA, variant U1 small nuclear 30) Homo sapiens
Analyze
Symbol: RNVU1-30
Name: RNA, variant U1 small nuclear 30
RGD ID: 16551668
HGNC Page HGNC:54434
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC124904627; U1; U1 spliceosomal RNA
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381149,636,766 - 149,636,929 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1149,636,766 - 149,636,929 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q21.2NCBI
T2T-CHM13v2.01148,760,898 - 148,761,061 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:191
Interacting mature miRNAs:192
Transcripts:ENST00000384101
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 14 11 7 102 20 9 7 1 7 17 1 11 3
Low 1261 942 761 246 970 165 1879 431 1841 87 836 727 91 739 894 4
Below cutoff 582 943 355 119 325 78 887 574 1113 44 216 303 41 242 635

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1149,636,766 - 149,636,929 (+)Ensembl
RefSeq Acc Id: XR_007067119
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381149,636,766 - 149,636,929 (+)NCBI
RefSeq Acc Id: XR_007071403
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01148,760,898 - 148,761,061 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC RNVU1-30 COSMIC
Ensembl Genes ENSG00000206828 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000384101 ENTREZGENE
GTEx ENSG00000206828 GTEx
HGNC ID HGNC:54434 ENTREZGENE
Human Proteome Map RNVU1-30 Human Proteome Map
NCBI Gene LOC124904627 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-30 RNVU1-30  RNA, variant U1 small nuclear 30  RNVU1-30  RNA, variant U1 small nuclear 30  Data Merged 737654 PROVISIONAL
2022-10-20 RNVU1-30  RNA, variant U1 small nuclear 30  LOC124904627  U1 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL
2022-04-12 LOC124904627  U1 spliceosomal RNA  U1  U1 spliceosomal RNA  Symbol and/or name change 5135510 APPROVED