LOC124900264 (small nucleolar RNA SNORA20) - Rat Genome Database

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Gene: LOC124900264 (small nucleolar RNA SNORA20) Homo sapiens
Analyze
No known orthologs.
Symbol: LOC124900264 (Ensembl: AC104212.1)
Name: small nucleolar RNA SNORA20
RGD ID: 16551616
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC104212.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,316,939 - 80,317,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,316,939 - 80,317,069 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map8q21.13NCBI
T2T-CHM13v2.0880,748,496 - 80,748,626 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENST00000383922
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium 1
Low 3 4 2 1 15 1 6 4 5 18 3 4
Below cutoff 5 1 3 2 7 2 2 2 5 15 3 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000383922
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,316,939 - 80,317,069 (-)Ensembl
RefSeq Acc Id: XR_007061202
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,316,939 - 80,317,069 (-)NCBI
RefSeq Acc Id: XR_007079538
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0880,748,496 - 80,748,626 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124900264 COSMIC
Ensembl Genes ENSG00000206649 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000383922 ENTREZGENE
GTEx ENSG00000206649 GTEx
Human Proteome Map LOC124900264 Human Proteome Map
NCBI Gene LOC124900264 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124900264  small nucleolar RNA SNORA20  AC104212.1    Symbol and/or name change 5135510 APPROVED