AC092384.1 (novel transcript, antisense to CBFA2T3) - Rat Genome Database

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Gene: AC092384.1 (novel transcript, antisense to CBFA2T3) Homo sapiens
Analyze
Symbol: AC092384.1
Name: novel transcript, antisense to CBFA2T3
RGD ID: 16551567
Description: ASSOCIATED WITH Autism; autistic disorder; KBG syndrome
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC100129697; uncharacterized LOC100129697
RGD Orthologs
Bonobo
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,939,271 - 88,953,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,939,789 - 88,951,524 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,005,679 - 89,020,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q24.3NCBI
HuRef1674,704,050 - 74,715,097 (+)NCBIHuRef
CHM1_11690,417,049 - 90,429,225 (+)NCBICHM1_1
T2T-CHM13v2.01695,016,690 - 95,031,162 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AC092384.1Humanautistic disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVar 
AC092384.1HumanKBG syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: KBG syndromeClinVarPMID:31690835

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
AC092384.1HumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVar 


AC092384.1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,939,271 - 88,953,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,939,789 - 88,951,524 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,005,679 - 89,020,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q24.3NCBI
HuRef1674,704,050 - 74,715,097 (+)NCBIHuRef
CHM1_11690,417,049 - 90,429,225 (+)NCBICHM1_1
T2T-CHM13v2.01695,016,690 - 95,031,162 (+)NCBIT2T-CHM13v2.0
LOC117976169
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,719,607 - 98,733,604 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,631,770 - 104,645,737 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,660,447 - 69,672,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3

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Variants in AC092384.1
5 total Variants

1 to 10 of 30 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 16q24.2-24.3(chr16:87853401-90081985)x3 copy number gain See cases [RCV000052428] Chr16:87853401..90081985 [GRCh38]
Chr16:87887007..90148393 [GRCh37]
Chr16:86444508..88675894 [NCBI36]
Chr16:16q24.2-24.3
pathogenic
GRCh38/hg38 16q23.2-24.3(chr16:80717291-90096662)x3 copy number gain See cases [RCV000141128] Chr16:80717291..90096662 [GRCh38]
Chr16:80751188..90163070 [GRCh37]
Chr16:79308689..88690571 [NCBI36]
Chr16:16q23.2-24.3
pathogenic
GRCh38/hg38 16q24.2-24.3(chr16:87306529-89269079)x1 copy number loss See cases [RCV000053362] Chr16:87306529..89269079 [GRCh38]
Chr16:87340135..89335487 [GRCh37]
Chr16:85897636..87862988 [NCBI36]
Chr16:16q24.2-24.3
pathogenic
GRCh38/hg38 16q24.2-24.3(chr16:87848216-90096995)x3 copy number gain See cases [RCV000138161] Chr16:87848216..90096995 [GRCh38]
Chr16:87881822..90163403 [GRCh37]
Chr16:86439323..88690904 [NCBI36]
Chr16:16q24.2-24.3
likely pathogenic
GRCh38/hg38 16q23.1-24.3(chr16:75377981-90081992)x3 copy number gain See cases [RCV000139302] Chr16:75377981..90081992 [GRCh38]
Chr16:75411879..90148400 [GRCh37]
Chr16:73969380..88675901 [NCBI36]
Chr16:16q23.1-24.3
pathogenic
GRCh38/hg38 16q24.1-24.3(chr16:86950106-89335814)x1 copy number loss See cases [RCV000143624] Chr16:86950106..89335814 [GRCh38]
Chr16:86983712..89402222 [GRCh37]
Chr16:85541213..87929723 [NCBI36]
Chr16:16q24.1-24.3
pathogenic
GRCh38/hg38 16q23.1-24.3(chr16:78816291-90081985)x3 copy number gain See cases [RCV000050840] Chr16:78816291..90081985 [GRCh38]
Chr16:78850188..90148393 [GRCh37]
Chr16:77407689..88675894 [NCBI36]
Chr16:16q23.1-24.3
pathogenic
GRCh38/hg38 16q22.1-24.3(chr16:70514631-90081985)x3 copy number gain See cases [RCV000052422] Chr16:70514631..90081985 [GRCh38]
Chr16:70548534..90148393 [GRCh37]
Chr16:69106035..88675894 [NCBI36]
Chr16:16q22.1-24.3
pathogenic
GRCh38/hg38 16q23.3-24.3(chr16:83478453-89932910)x3 copy number gain See cases [RCV000137980] Chr16:83478453..89932910 [GRCh38]
Chr16:83512058..89999318 [GRCh37]
Chr16:82069559..88526819 [NCBI36]
Chr16:16q23.3-24.3
likely pathogenic
GRCh38/hg38 16q23.2-24.3(chr16:80067315-90057871)x3 copy number gain See cases [RCV000142698] Chr16:80067315..90057871 [GRCh38]
Chr16:80101212..90124279 [GRCh37]
Chr16:78658713..88651780 [NCBI36]
Chr16:16q23.2-24.3
pathogenic
1 to 10 of 30 rows

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:165
Interacting mature miRNAs:170
Transcripts:ENST00000378347, ENST00000593752
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1203 2294 2676 2088 4617 1496 1925 1 417 1840 256 2023 6572 6149 14 3610 703 1524 1408 162



Ensembl Acc Id: ENST00000378347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1688,939,789 - 88,951,524 (+)Ensembl
RefSeq Acc Id: NR_168285
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381688,939,271 - 88,953,782 (+)NCBI
T2T-CHM13v2.01695,016,690 - 95,031,162 (+)NCBI
Sequence:
Protein RefSeqs NP_001277259 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC85311 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
COSMIC AC092384.1 COSMIC
Ensembl Genes ENSG00000205018 Ensembl
GTEx ENSG00000205018 GTEx
Human Proteome Map AC092384.1 Human Proteome Map
NCBI Gene LOC100129697 ENTREZGENE
RNAcentral URS00007DCF6E RNACentral
  URS0001BBE657 RNACentral
UniProt Q6ZP14_HUMAN UniProtKB/TrEMBL


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AC092384.1  novel transcript, antisense to CBFA2T3  AC092384.1  uncharacterized LOC100129697  Symbol and/or name change 19259462 PROVISIONAL
2020-06-25 AC092384.1  uncharacterized LOC100129697  LOC100129697  uncharacterized LOC100129697  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100129697  uncharacterized LOC100129697  AC092384.1  uncharacterized LOC100129697  Symbol and/or name change 5135510 APPROVED