CROCCP3 (CROCC pseudogene 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CROCCP3 (CROCC pseudogene 3) Homo sapiens
Analyze
Symbol: CROCCP3
Name: CROCC pseudogene 3
RGD ID: 1641962
HGNC Page HGNC:29405
Description: INTERACTS WITH arsane; arsenic atom; butanal
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ciliary rootlet coiled-coil, rootletin pseudogene 3; CROCCL2; dJ798A10.2; KIAA0445; KIAA1922
Related Functional Gene: CROCC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,467,436 - 16,492,701 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,474,396 - 16,491,307 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl116,458,753 - 16,499,257 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,793,931 - 16,819,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,658,374 - 16,698,726 (-)NCBINCBI36Build 36hg18NCBI36
Celera115,273,873 - 15,299,141 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef115,311,261 - 15,336,997 (-)NCBIHuRef
CHM1_1116,592,728 - 16,617,996 (-)NCBICHM1_1
T2T-CHM13v2.0115,909,123 - 15,934,359 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11572484   PMID:12477932   PMID:35906200  


Genomics

Variants

.
Variants in CROCCP3
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1498
Count of miRNA genes:675
Interacting mature miRNAs:804
Transcripts:ENST00000263511, ENST00000420820, ENST00000589964, ENST00000590118, ENST00000591316, ENST00000591348
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407097329GWAS746305_Hbody mass index QTL GWAS746305 (human)1e-10body mass indexbody mass index (BMI) (CMO:0000105)11648380616483807Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407070892GWAS719868_Hbody height QTL GWAS719868 (human)2e-08body height (VT:0001253)body height (CMO:0000106)11648173016481731Human
407408263GWAS1057239_Htestosterone measurement QTL GWAS1057239 (human)5e-08testosterone measurementserum testosterone level (CMO:0000568)11648959416489595Human

Markers in Region
SHGC-74276  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,800,198 - 16,800,444UniSTSGRCh37
Build 36116,672,785 - 16,673,031RGDNCBI36
Celera115,280,142 - 15,280,388RGD
Cytogenetic Map1p36.13UniSTS
HuRef115,317,544 - 15,317,790UniSTS
TNG Radiation Hybrid Map122477.0UniSTS
GeneMap99-GB4 RH Map160.63UniSTS
GeneMap99-GB4 RH Map160.43UniSTS
Whitehead-RH Map154.9UniSTS
RH69268  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,799,832 - 16,799,952UniSTSGRCh37
Build 36116,672,419 - 16,672,539RGDNCBI36
Celera115,279,776 - 15,279,896RGD
Cytogenetic Map1p36.13UniSTS
HuRef115,317,178 - 15,317,298UniSTS
A004P30  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,795,427 - 16,795,639UniSTSGRCh37
Build 36116,668,014 - 16,668,226RGDNCBI36
Celera115,275,371 - 15,275,583RGD
Cytogenetic Map1p36.13UniSTS
HuRef115,312,759 - 15,312,971UniSTS
GeneMap99-GB4 RH Map160.43UniSTS
D1S3581  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,800,286 - 16,800,421UniSTSGRCh37
Build 36116,672,873 - 16,673,008RGDNCBI36
Celera115,280,230 - 15,280,365RGD
Cytogenetic Map1p36.13UniSTS
HuRef115,317,632 - 15,317,767UniSTS
AL009794  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37116,794,355 - 16,794,544UniSTSGRCh37
Build 36116,666,942 - 16,667,131RGDNCBI36
Celera115,274,297 - 15,274,486RGD
Cytogenetic Map1p36.13UniSTS
HuRef115,311,685 - 15,311,874UniSTS
RH69968  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p36.13UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2432 2788 2245 4942 1719 2340 4 618 1947 460 2268 7276 6453 52 3708 847 1731 1611 170

Sequence


Ensembl Acc Id: ENST00000263511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,467,436 - 16,492,701 (-)Ensembl
Ensembl Acc Id: ENST00000420820
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,474,396 - 16,491,307 (-)Ensembl
Ensembl Acc Id: ENST00000589964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,473,908 - 16,499,257 (-)Ensembl
Ensembl Acc Id: ENST00000590118
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,490,634 - 16,499,257 (-)Ensembl
Ensembl Acc Id: ENST00000591316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,476,930 - 16,483,341 (-)Ensembl
Ensembl Acc Id: ENST00000591348
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,468,922 - 16,491,082 (-)Ensembl
Ensembl Acc Id: ENST00000715305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,458,753 - 16,476,025 (-)Ensembl
Ensembl Acc Id: ENST00000715306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl116,470,698 - 16,490,675 (-)Ensembl
RefSeq Acc Id: NR_023386
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38116,467,436 - 16,492,701 (-)NCBI
GRCh37116,793,931 - 16,819,196 (-)RGD
Celera115,273,873 - 15,299,141 (-)RGD
HuRef115,311,261 - 15,336,997 (-)ENTREZGENE
CHM1_1116,592,728 - 16,617,996 (-)NCBI
T2T-CHM13v2.0115,909,123 - 15,934,359 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB67815 (Get FASTA)   NCBI Sequence Viewer  
  EAW51787 (Get FASTA)   NCBI Sequence Viewer  

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IVE0-F1-model_v2 AlphaFold Q8IVE0 1-287 view protein structure

Promoters
RGD ID:6809542
Promoter ID:HG_ACW:715
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:KIAA1922.AAPR07,   KIAA1922.BAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 36116,698,016 - 16,698,516 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC CROCCP3 COSMIC
Ensembl Genes ENSG00000080947 Ensembl
  ENSG00000290842 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000263511 ENTREZGENE
GTEx ENSG00000080947 GTEx
  ENSG00000290842 GTEx
HGNC ID HGNC:29405 ENTREZGENE
Human Proteome Map CROCCP3 Human Proteome Map
NCBI Gene 114819 ENTREZGENE
UniProt CROL2_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q96PW6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 CROCCP3  CROCC pseudogene 3    ciliary rootlet coiled-coil, rootletin pseudogene 3  Symbol and/or name change 5135510 APPROVED
2011-07-27 CROCCP3  ciliary rootlet coiled-coil, rootletin pseudogene 3  CROCCL2  ciliary rootlet coiled-coil, rootletin-like 2  Symbol and/or name change 5135510 APPROVED