TET1P1 (tet methylcytosine dioxygenase 1 pseudogene 1) - Rat Genome Database

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Gene: TET1P1 (tet methylcytosine dioxygenase 1 pseudogene 1) Homo sapiens
Analyze
Symbol: TET1P1
Name: tet methylcytosine dioxygenase 1 pseudogene 1
RGD ID: 1626694
HGNC Page HGNC:33586
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: CXXC6P1
Related Functional Gene: TET1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381387,889,943 - 87,893,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1387,890,172 - 87,892,472 (-)EnsemblGRCh38hg38GRCh38
GRCh371388,542,198 - 88,545,852 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361387,340,428 - 87,342,734 (-)NCBINCBI36Build 36hg18NCBI36
Celera1369,383,499 - 69,386,953 (-)NCBICelera
Cytogenetic Map13q31.2NCBI
HuRef1369,128,167 - 69,131,621 (-)NCBIHuRef
CHM1_11388,510,640 - 88,514,094 (-)NCBICHM1_1
T2T-CHM13v2.01387,093,485 - 87,097,139 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:160
Count of miRNA genes:159
Interacting mature miRNAs:160
Transcripts:ENST00000426627
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 4 1
Below cutoff 44 29 21 9 40 8 109 24 90 19 154 20 1 10 30 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000426627
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1387,890,172 - 87,892,472 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TET1P1 COSMIC
Ensembl Genes ENSG00000232204 Ensembl
GTEx ENSG00000232204 GTEx
HGNC ID HGNC:33586 ENTREZGENE
Human Proteome Map TET1P1 Human Proteome Map
NCBI Gene 441662 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-10-04 TET1P1  tet methylcytosine dioxygenase 1 pseudogene 1  TET1P1  tet oncogene 1 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 TET1P1  tet oncogene 1 pseudogene 1  CXXC6P1  CXXC finger 6 pseudogene 1  Symbol and/or name change 5135510 APPROVED