Gm15080 (predicted gene 15080) - Rat Genome Database

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Gene: Gm15080 (predicted gene 15080) Mus musculus
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Symbol: Gm15080
Name: predicted gene 15080
RGD ID: 1625991
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: hypothetical protein LOC666184; Ott-like; ovary testis transcribed; ovary testis transcribed-like; uncharacterized protein LOC666184
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X146,775,989 - 146,816,170 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX146,775,989 - 146,816,170 (+)EnsemblGRCm39 Ensembl
GRCm38X147,992,993 - 148,033,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX147,992,993 - 148,033,174 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X144,423,259 - 144,467,327 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X143,235,078 - 143,279,542 (+)NCBIMGSCv36mm8
Cytogenetic MapXF2NCBI
cM MapX68.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm15080Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm15080Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm15080Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:8842733  



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Variants in Gm15080
1214 total Variants

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:235
Interacting mature miRNAs:245
Transcripts:ENSMUST00000112804
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse

1 to 10 of 13 rows
Ott  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF3UniSTS
Cytogenetic MapXF2UniSTS
cM MapX62.5UniSTS
mOtt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF3UniSTS
Cytogenetic MapXF2UniSTS
Ott  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF3UniSTS
Cytogenetic MapXF2UniSTS






RefSeq Transcripts NM_001198988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX682540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000112804   ⟹   ENSMUSP00000108423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX146,775,989 - 146,816,170 (+)Ensembl
GRCm38.p6 EnsemblX147,992,993 - 148,033,174 (+)Ensembl
RefSeq Acc Id: NM_001198988   ⟹   NP_001185917
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X146,775,989 - 146,816,170 (+)NCBI
GRCm38X147,992,993 - 148,033,174 (+)ENTREZGENE
cM MapX ENTREZGENE
Sequence:
Protein RefSeqs NP_001185917 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000108423
  ENSMUSP00000108423.3
RefSeq Acc Id: NP_001185917   ⟸   NM_001198988
- UniProtKB: A2BI02 (UniProtKB/TrEMBL),   Q32MH2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000108423   ⟸   ENSMUST00000112804

Name Modeler Protein Id AA Range Protein Structure
AF-A2BI02-F1-model_v2 AlphaFold A2BI02 1-449 view protein structure



1 to 12 of 12 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000072931 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000112804 ENTREZGENE
  ENSMUST00000112804.3 UniProtKB/TrEMBL
InterPro Trans_Neuromod_Peptide-like UniProtKB/TrEMBL
KEGG Report mmu:666184 UniProtKB/TrEMBL
MGD MGI:3712217 ENTREZGENE
NCBI Gene 666184 ENTREZGENE
PANTHER LEUCINE ZIPPER PROTEIN 4-RELATED UniProtKB/TrEMBL
  LEUCINE ZIPPER PROTEIN 4-RELATED UniProtKB/TrEMBL
PhenoGen Gm15080 PhenoGen
UniProt A2BI02 ENTREZGENE, UniProtKB/TrEMBL
  Q32MH2 ENTREZGENE
1 to 12 of 12 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm15080  predicted gene 15080  OTTMUSG00000018964  predicted gene, OTTMUSG00000018964  Symbol and/or name change 5135510 APPROVED