Gm12070 (predicted gene 12070) - Rat Genome Database

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Gene: Gm12070 (predicted gene 12070) Mus musculus
Analyze
Symbol: Gm12070
Name: predicted gene 12070
RGD ID: 1624873
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Related Functional Gene: Gapdh  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391126,735,108 - 26,737,860 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1126,736,633 - 26,737,634 (+)EnsemblGRCm39 Ensembl
GRCm381126,785,108 - 26,787,860 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1126,786,633 - 26,787,634 (+)EnsemblGRCm38mm10GRCm38
MGSCv371126,685,108 - 26,687,860 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361126,685,108 - 26,687,860 (+)NCBIMGSCv36mm8
Celera1724,102,199 - 24,103,233 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1115.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932   PMID:16944949  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:241
Count of miRNA genes:215
Interacting mature miRNAs:229
Transcripts:ENSMUST00000119551, ENSMUST00000179387
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1302179Mndl2_mmandible length 2 (mouse)Not determined112590609727673304Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse

Markers in Region
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
cM Map656.0UniSTS
PMC112637P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map9A5.3UniSTS
cM Map656.0UniSTS
PMC114224P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
PMC133555P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
PMC150876P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
PMC152933P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
G65758  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
Gapd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5A1UniSTS
cM Map656.0UniSTS
PMC303337P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map6F2UniSTS
cM Map656.0UniSTS
PMC98059P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H4UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
cM Map656.0UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map9F2UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map9F2UniSTS
Gapdh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14C1UniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map11A3.3UniSTS
Cytogenetic Map1H4UniSTS
cM Map656.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000119551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1126,736,633 - 26,737,634 (+)Ensembl
GRCm38.p6 Ensembl1126,786,633 - 26,787,634 (+)Ensembl
RefSeq Acc Id: NR_002890
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391126,735,108 - 26,737,860 (+)NCBI
GRCm381126,785,108 - 26,787,860 (+)ENTREZGENE
MGSCv371126,685,108 - 26,687,860 (+)RGD
Celera1137,570,749 - 37,573,502 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000069939 Ensembl
MGD MGI:3650751 ENTREZGENE
NCBI Gene 654472 ENTREZGENE
PhenoGen Gm12070 PhenoGen