Mndl2_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Mndl2_m (mandible length 2 (mouse)) Mus musculus

Symbol: Mndl2_m
Name: mandible length 2 (mouse)
RGD ID: 1302179
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391125,906,097 - 27,673,304MOUSEQTLGRCm39
GRCm381125,956,097 - 27,723,304MOUSEQTLGRCm38
MGSCv3119,621,527 - 45,621,527RGD
cM Map11syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:12161465  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
23112795730522E02RikRIKEN cDNA 5730522E02 gene112556684626160576Mouse
401708977LOC131378237STARR-seq mESC enhancer starr_28953112594907625950670Mouse
401713420LOC131378238STARR-seq mESC enhancer starr_28954112599705126002689Mouse
401716430LOC131378239STARR-seq mESC enhancer starr_28955112604852326049815Mouse
401702269LOC131378240STARR-seq mESC enhancer starr_28956112605232326054657Mouse
401707318LOC131378241STARR-seq mESC enhancer starr_28958112607816326079941Mouse
401712930LOC131378242STARR-seq mESC enhancer starr_28962112611671126118354Mouse
401702741LOC131378243STARR-seq mESC enhancer starr_28963112612010426121072Mouse
9655403Mir6372microRNA 6372112615224026152348Mouse
9639708Gm31023predicted gene, 31023112621801326218357Mouse
14998327Gm22868predicted gene, 22868112628754026287703Mouse
401700976LOC131378244STARR-seq mESC enhancer starr_28964112631832626320932Mouse
401711515LOC131378245STARR-seq mESC enhancer starr_28965112632161526322502Mouse
401709094LOC131378246STARR-seq mESC enhancer starr_28966112632305826324472Mouse
5143233Gm18324predicted gene, 18324112633428926334789Mouse
1618380FanclFanconi anemia, complementation group L112633708426421883Mouse
401832790LOC132441676STARR-positive B cell enhancer mm9_chr11:26287122-26287423112633712226337423Mouse
1323121Vrk2vaccinia related kinase 2112642139826544006Mouse
39130876LOC109279891VISTA enhancer mm57112643908826441733Mouse
401834339LOC132441677STARR-positive B cell enhancer ABC_E9820112653607526536375Mouse
401834392LOC132441678STARR-positive B cell enhancer ABC_E9821112653662926536929Mouse
401833367LOC132441679STARR-positive B cell enhancer ABC_E905112659054126590842Mouse
401701102LOC131378247STARR-seq mESC enhancer starr_28968112661895526620330Mouse
2294293Gm12071predicted gene 12071112666287526663525Mouse
401704161LOC131378248STARR-seq mESC enhancer starr_28969112670326426704517Mouse
39129713LOC110120520VISTA enhancer mm1555112672202026724013Mouse
1624873Gm12070predicted gene 12070112673510826737860Mouse
5147129Gm12073predicted gene 12073112680633326806926Mouse
401715564LOC131378249STARR-seq mESC enhancer starr_28970112683936026840536Mouse
401715806LOC131378250STARR-seq mESC enhancer starr_28971112701431027015999Mouse
15001751Gm24850predicted gene, 24850112703701727037135Mouse
401714372LOC131378251STARR-seq mESC enhancer starr_28972112708425527085646Mouse
401709405LOC131378252STARR-seq mESC enhancer starr_28973112712999827131446Mouse
401715582LOC131378253STARR-seq mESC enhancer starr_28974112714526827147183Mouse
401713643LOC131378254STARR-seq mESC enhancer starr_28975112715388227156779Mouse
401702550LOC131378255STARR-seq mESC enhancer starr_28976112717149227173961Mouse
401701101LOC131378256STARR-seq mESC enhancer starr_28978112726160527265266Mouse
14997885Gm25387predicted gene, 25387112726884727268978Mouse
401705558LOC131378257STARR-seq mESC enhancer starr_28979112736126827363448Mouse
15003062Gm12077predicted gene 12077112739862727449587Mouse
401712218LOC131378258STARR-seq mESC enhancer starr_28980112740073227401734Mouse
401713680LOC131378259STARR-seq mESC enhancer starr_28981112741320627414413Mouse
401712067LOC131378260STARR-seq mESC enhancer starr_28982112743588827437625Mouse
401706487LOC131378261STARR-seq mESC enhancer starr_28983112744856027450049Mouse
2303700Gm3810predicted gene 3810112745655927458218Mouse
401714705LOC131378262STARR-seq mESC enhancer starr_28984112755198327553094Mouse
401703603LOC131378263STARR-seq mESC enhancer starr_28985112755842527561017Mouse
401702761LOC131378264STARR-seq mESC enhancer starr_28986112765386527655291Mouse
401711004LOC131378265STARR-seq mESC enhancer starr_28987112765891127660455Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1302179Mndl2_mmandible length 2 (mouse)Not determined112590609727673304Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:2663057

RGD Curation Notes
Note Type Note Reference