Cfap97d1 (CFAP97 domain containing 1) - Rat Genome Database

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Gene: Cfap97d1 (CFAP97 domain containing 1) Mus musculus
Analyze
Symbol: Cfap97d1
Name: CFAP97 domain containing 1
RGD ID: 1623916
MGI Page MGI
Description: Involved in sperm axoneme assembly. Orthologous to human CFAP97D1 (CFAP97 domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700006E09Rik; CFAP97 domain-containing protein 1; hypothetical protein LOC75437; RIKEN cDNA 1700006E09 gene; RP23-398F7.4; sperm axonemal maintenance protein CFAP97D1; uncharacterized protein C17orf105 homolog; uncharacterized protein CFAP97D1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,877,882 - 101,883,090 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,875,105 - 101,883,090 (+)EnsemblGRCm39 Ensembl
GRCm3811101,987,056 - 101,992,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,984,279 - 101,992,264 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,848,370 - 101,853,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,803,144 - 101,808,355 (+)NCBIMGSCv36mm8
Celera11113,692,328 - 113,697,510 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:27626380   PMID:32785227  
PMID:38355793  


Genomics

Comparative Map Data
Cfap97d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,877,882 - 101,883,090 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,875,105 - 101,883,090 (+)EnsemblGRCm39 Ensembl
GRCm3811101,987,056 - 101,992,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,984,279 - 101,992,264 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711101,848,370 - 101,853,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,803,144 - 101,808,355 (+)NCBIMGSCv36mm8
Celera11113,692,328 - 113,697,510 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1165.48NCBI
CFAP97D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,780,435 - 43,787,620 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,780,435 - 43,787,620 (+)EnsemblGRCh38hg38GRCh38
GRCh371741,857,803 - 41,864,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,213,329 - 39,220,506 (+)NCBINCBI36Build 36hg18NCBI36
Celera1738,565,804 - 38,570,055 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1737,621,895 - 37,626,146 (+)NCBIHuRef
CHM1_11742,093,413 - 42,097,664 (+)NCBICHM1_1
T2T-CHM13v2.01744,632,979 - 44,640,164 (+)NCBIT2T-CHM13v2.0
Cfap97d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81087,432,559 - 87,444,711 (+)NCBIGRCr8
mRatBN7.21086,933,585 - 86,944,566 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,933,808 - 86,938,244 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,963,204 - 91,968,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01091,438,807 - 91,443,998 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,832,118 - 86,837,309 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,918,313 - 89,930,913 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,918,373 - 89,923,571 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01089,710,775 - 89,723,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,045,002 - 91,050,200 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1085,652,983 - 85,658,181 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Cfap97d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,072,403 - 17,077,128 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,072,403 - 17,077,642 (+)NCBIChiLan1.0ChiLan1.0
CFAP97D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21921,118,808 - 21,129,398 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,083,123 - 23,093,712 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01713,612,308 - 13,618,791 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,778,851 - 13,783,284 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,779,785 - 13,783,284 (-)Ensemblpanpan1.1panPan2
CFAP97D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,500,889 - 19,517,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,513,502 - 19,517,129 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,890,095 - 18,907,163 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,196,092 - 20,213,236 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,196,095 - 20,212,413 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,048,704 - 19,065,799 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,231,898 - 19,248,989 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,376,971 - 19,394,066 (-)NCBIUU_Cfam_GSD_1.0
Cfap97d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,849,403 - 18,854,119 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541340,480 - 344,587 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936541340,509 - 344,587 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP97D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,330,951 - 19,334,824 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,330,354 - 19,336,221 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,563,989 - 19,568,692 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP97D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11662,617,060 - 62,621,898 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1662,617,969 - 62,621,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607733,390,278 - 33,394,744 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap97d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624795990,511 - 993,904 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap97d1
176 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:144
Interacting mature miRNAs:155
Transcripts:ENSMUST00000010985, ENSMUST00000175972, ENSMUST00000176722
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000010985   ⟹   ENSMUSP00000010985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11101,877,882 - 101,883,090 (+)Ensembl
GRCm38.p6 Ensembl11101,987,056 - 101,992,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000175972   ⟹   ENSMUSP00000135566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11101,875,110 - 101,881,676 (+)Ensembl
GRCm38.p6 Ensembl11101,984,284 - 101,990,850 (+)Ensembl
Ensembl Acc Id: ENSMUST00000176722   ⟹   ENSMUSP00000134890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11101,875,105 - 101,883,082 (+)Ensembl
GRCm38.p6 Ensembl11101,984,279 - 101,992,256 (+)Ensembl
RefSeq Acc Id: NM_029287   ⟹   NP_083563
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911101,877,882 - 101,883,090 (+)NCBI
GRCm3811101,987,056 - 101,992,264 (+)ENTREZGENE
MGSCv3711101,848,370 - 101,853,578 (+)RGD
Celera11113,692,328 - 113,697,510 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_083563 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI16820 (Get FASTA)   NCBI Sequence Viewer  
  AAI16822 (Get FASTA)   NCBI Sequence Viewer  
  BAB24178 (Get FASTA)   NCBI Sequence Viewer  
  EDL34076 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000010985
  ENSMUSP00000010985.8
  ENSMUSP00000134890.2
GenBank Protein Q9DAN9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083563   ⟸   NM_029287
- UniProtKB: Q9DAN9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000134890   ⟸   ENSMUST00000176722
Ensembl Acc Id: ENSMUSP00000010985   ⟸   ENSMUST00000010985
Ensembl Acc Id: ENSMUSP00000135566   ⟸   ENSMUST00000175972

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DAN9-F1-model_v2 AlphaFold Q9DAN9 1-164 view protein structure

Promoters
RGD ID:8676844
Promoter ID:EPDNEW_M16452
Type:initiation region
Name:1700006E09Rik_1
Description:Mus musculus RIKEN cDNA 1700006E09 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811101,987,081 - 101,987,141EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922687 AgrOrtholog
Ensembl Genes ENSMUSG00000010841 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000010985 ENTREZGENE
  ENSMUST00000010985.8 UniProtKB/Swiss-Prot
  ENSMUST00000176722.8 UniProtKB/TrEMBL
InterPro CFAP97D1/2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hmw/CFAP97D1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75437 UniProtKB/Swiss-Prot
MGD MGI:1922687 ENTREZGENE
NCBI Gene 75437 ENTREZGENE
PANTHER PTHR33768 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERM AXONEMAL MAINTENANCE PROTEIN CFAP97D1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KIAA1430 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cfap97d1 PhenoGen
UniProt CF97D_MOUSE UniProtKB/Swiss-Prot
  H3BJ87_MOUSE UniProtKB/TrEMBL
  Q9DAN9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 Cfap97d1  CFAP97 domain containing 1  1700006E09Rik  RIKEN cDNA 1700006E09 gene  Symbol and/or name change 5135510 APPROVED