Ly96 (lymphocyte antigen 96) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ly96 (lymphocyte antigen 96) Mus musculus
Analyze
Symbol: Ly96
Name: lymphocyte antigen 96
RGD ID: 1623303
MGI Page MGI
Description: Predicted to enable lipopolysaccharide immune receptor activity. Involved in cellular response to lipopolysaccharide; positive regulation of tumor necrosis factor production; and toll-like receptor 4 signaling pathway. Acts upstream of or within positive regulation of lipopolysaccharide-mediated signaling pathway. Part of lipopolysaccharide receptor complex. Is expressed in several structures, including extraembryonic component; gonad; immune system; integumental system; and nervous system. Orthologous to human LY96 (lymphocyte antigen 96).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ESO; ESOP-1; ly-96; MD-2; MD2; MGC151162; myeloid differentiation factor-2; myeloid differentiation protein-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,758,680 - 16,779,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,758,275 - 16,779,835 (+)EnsemblGRCm39 Ensembl
GRCm38116,688,456 - 16,709,605 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,688,051 - 16,709,611 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,678,537 - 16,699,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,673,670 - 16,694,819 (+)NCBIMGSCv36mm8
Celera116,621,307 - 16,642,544 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
adenosine  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
amitrole  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atazanavir sulfate  (ISO)
azathioprine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
chenodeoxycholic acid  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
deoxycholic acid  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
ferroheme b  (EXP)
fluoranthene  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fucoxanthin  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
glucose  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycyrrhetinate  (EXP)
glycyrrhetinic acid  (EXP)
heme b  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (EXP,ISO)
melatonin  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
Morroniside  (EXP)
N-methylformamide  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
platycodin D  (ISO)
prednisolone  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
procyanidin B1  (ISO)
propanal  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
succimer  (ISO)
tartrazine  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thalidomide  (EXP)
titanium dioxide  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Toll-like receptors. Moresco EM, etal., Curr Biol. 2011 Jul 12;21(13):R488-93. doi: 10.1016/j.cub.2011.05.039.
2. Myeloid differentiation 2 as a therapeutic target of inflammatory disorders. Park SH, etal., Pharmacol Ther. 2012 Mar;133(3):291-8. doi: 10.1016/j.pharmthera.2011.11.001. Epub 2011 Nov 19.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Innate immune regulation of Serratia marcescens-induced corneal inflammation and infection. Zhou R, etal., Invest Ophthalmol Vis Sci. 2012 Oct 25;53(11):7382-8. doi: 10.1167/iovs.12-10238.
Additional References at PubMed
PMID:10349636   PMID:10359581   PMID:10725698   PMID:10880523   PMID:10891475   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11884465   PMID:12055629   PMID:12466851   PMID:12477932  
PMID:12496426   PMID:12960264   PMID:15334694   PMID:15337750   PMID:15369778   PMID:15381113   PMID:16141072   PMID:16141073   PMID:16407172   PMID:16547261   PMID:16670331   PMID:16980981  
PMID:17167049   PMID:17339472   PMID:17353199   PMID:17400552   PMID:17420011   PMID:17601656   PMID:17803912   PMID:17947685   PMID:17950615   PMID:18056837   PMID:18203953   PMID:18203970  
PMID:18250425   PMID:18398934   PMID:18559343   PMID:18567586   PMID:18606678   PMID:18650420   PMID:18701460   PMID:18936141   PMID:18988922   PMID:19060881   PMID:19064998   PMID:19402754  
PMID:19525933   PMID:19570822   PMID:19783674   PMID:20018893   PMID:20037584   PMID:20133493   PMID:20592019   PMID:20617171   PMID:20826748   PMID:21233280   PMID:21518788   PMID:21572044  
PMID:21677750   PMID:21802073   PMID:21857663   PMID:21865549   PMID:21873635   PMID:22031950   PMID:22354914   PMID:22422925   PMID:22474354   PMID:22532668   PMID:23019612   PMID:23071439  
PMID:23203928   PMID:23471986   PMID:23568774   PMID:23583403   PMID:23636052   PMID:23638128   PMID:23858030   PMID:23887873   PMID:24380872   PMID:24420921   PMID:25049357   PMID:25179131  
PMID:25218806   PMID:25559892   PMID:25589072   PMID:26076332   PMID:26165843   PMID:26344079   PMID:26586036   PMID:26806306   PMID:26831104   PMID:27006955   PMID:27235587   PMID:28045026  
PMID:28063877   PMID:28322341   PMID:28542817   PMID:28726347   PMID:28767204   PMID:28965884   PMID:29020088   PMID:29077272   PMID:29111459   PMID:29368691   PMID:30091835   PMID:30299441  
PMID:30424767   PMID:30959575   PMID:31032920   PMID:31254764   PMID:31861702   PMID:32151799   PMID:32210720   PMID:32358497   PMID:33338595   PMID:33495414   PMID:33495830   PMID:33841413  
PMID:34530841   PMID:34931753   PMID:34943814   PMID:35176461   PMID:35343085   PMID:36115635   PMID:36698311   PMID:37806092  


Genomics

Comparative Map Data
Ly96
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,758,680 - 16,779,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,758,275 - 16,779,835 (+)EnsemblGRCm39 Ensembl
GRCm38116,688,456 - 16,709,605 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,688,051 - 16,709,611 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,678,537 - 16,699,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,673,670 - 16,694,819 (+)NCBIMGSCv36mm8
Celera116,621,307 - 16,642,544 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.1NCBI
LY96
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,991,392 - 74,099,857 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,991,392 - 74,029,079 (+)EnsemblGRCh38hg38GRCh38
GRCh37874,903,627 - 74,941,314 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36875,066,144 - 75,103,859 (+)NCBINCBI36Build 36hg18NCBI36
Build 34875,066,143 - 75,103,859NCBI
Celera870,901,437 - 70,939,164 (+)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,394,473 - 70,432,211 (+)NCBIHuRef
CHM1_1874,955,493 - 74,993,242 (+)NCBICHM1_1
T2T-CHM13v2.0874,420,655 - 74,529,114 (+)NCBIT2T-CHM13v2.0
Ly96
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr857,365,536 - 7,397,864 (-)NCBIGRCr8
mRatBN7.252,582,233 - 2,612,357 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl52,582,254 - 2,612,386 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx54,700,247 - 4,729,411 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.056,339,109 - 6,368,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.056,037,630 - 6,066,747 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.051,972,212 - 1,989,448 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.051,967,544 - 1,984,775 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.451,701,969 - 1,705,247 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera52,204,184 - 2,228,082 (-)NCBICelera
Cytogenetic Map5q11NCBI
Ly96
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,356,154 - 6,387,529 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,356,121 - 6,387,350 (-)NCBIChiLan1.0ChiLan1.0
LY96
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2789,734,070 - 89,780,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1865,362,059 - 65,408,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0870,525,058 - 70,567,839 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1872,169,986 - 72,207,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl872,169,986 - 72,207,372 (+)Ensemblpanpan1.1panPan2
LY96
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12922,493,757 - 22,515,147 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2922,493,896 - 22,515,117 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,758,770 - 22,780,161 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02922,604,586 - 22,625,987 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2922,604,724 - 22,625,957 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,663,372 - 22,684,762 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02922,698,527 - 22,719,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02922,981,883 - 23,003,258 (+)NCBIUU_Cfam_GSD_1.0
Ly96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530356,777,115 - 56,795,405 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366482,653,252 - 2,671,453 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LY96
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl461,926,064 - 61,950,697 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1461,919,806 - 61,950,712 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2467,631,664 - 67,656,017 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LY96
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1869,591,885 - 69,629,939 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl869,591,941 - 69,630,274 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603971,667,502 - 71,779,874 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ly96
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474417,208,990 - 17,241,347 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474417,209,285 - 17,241,347 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:29
Interacting mature miRNAs:33
Transcripts:ENSMUST00000026881
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000026881   ⟹   ENSMUSP00000026881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,758,657 - 16,779,835 (+)Ensembl
GRCm38.p6 Ensembl116,688,433 - 16,709,611 (+)Ensembl
Ensembl Acc Id: ENSMUST00000190366   ⟹   ENSMUSP00000140411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,758,732 - 16,779,761 (+)Ensembl
GRCm38.p6 Ensembl116,688,508 - 16,709,537 (+)Ensembl
Ensembl Acc Id: ENSMUST00000191260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,758,275 - 16,762,171 (+)Ensembl
GRCm38.p6 Ensembl116,688,051 - 16,691,947 (+)Ensembl
RefSeq Acc Id: NM_001159711   ⟹   NP_001153183
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,758,680 - 16,779,829 (+)NCBI
GRCm38116,688,456 - 16,709,605 (+)NCBI
MGSCv37116,678,537 - 16,699,686 (+)RGD
Celera116,621,307 - 16,642,544 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016923   ⟹   NP_058619
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,758,680 - 16,779,829 (+)NCBI
GRCm38116,688,456 - 16,709,605 (+)NCBI
MGSCv37116,678,537 - 16,699,686 (+)RGD
Celera116,621,307 - 16,642,544 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_058619   ⟸   NM_016923
- Peptide Label: isoform A precursor
- UniProtKB: Q9JHF9 (UniProtKB/Swiss-Prot),   Q14AM4 (UniProtKB/TrEMBL),   Q64HC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153183   ⟸   NM_001159711
- Peptide Label: isoform B precursor
- UniProtKB: A0A087WQZ9 (UniProtKB/TrEMBL),   Q64HC9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000026881   ⟸   ENSMUST00000026881
Ensembl Acc Id: ENSMUSP00000140411   ⟸   ENSMUST00000190366
Protein Domains
MD-2-related lipid-recognition

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JHF9-F1-model_v2 AlphaFold Q9JHF9 1-160 view protein structure

Promoters
RGD ID:6818049
Promoter ID:MM_KWN:193
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000026881,   NM_001159711
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,678,081 - 16,678,982 (+)MPROMDB
RGD ID:6873242
Promoter ID:EPDNEW_M69
Type:initiation region
Name:Ly96_1
Description:Mus musculus lymphocyte antigen 96 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,688,433 - 16,688,493EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341909 AgrOrtholog
Ensembl Genes ENSMUSG00000025779 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026881 ENTREZGENE
  ENSMUST00000026881.11 UniProtKB/Swiss-Prot
  ENSMUST00000190366 ENTREZGENE
  ENSMUST00000190366.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.770 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LY96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ML_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17087 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1341909 ENTREZGENE
NCBI Gene 17087 ENTREZGENE
PANTHER LYMPHOCYTE ANTIGEN 96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ly96 PhenoGen
SMART SM00737 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WQZ9 ENTREZGENE, UniProtKB/TrEMBL
  LY96_MOUSE UniProtKB/Swiss-Prot
  Q14AM4 ENTREZGENE, UniProtKB/TrEMBL
  Q64HC9 ENTREZGENE, UniProtKB/TrEMBL
  Q9JHF9 ENTREZGENE