Symbol: |
9430091E24Rik |
Name: |
RIKEN cDNA 9430091E24 gene |
RGD ID: |
1622655 |
MGI Page |
MGI |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Previously known as: |
hypothetical protein LOC434350 |
Latest Assembly: |
GRCm39 - Mouse Genome Assembly GRCm39 |
Position: |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 111,854,076 - 111,872,130 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 111,855,352 - 111,872,231 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 111,127,444 - 111,145,498 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 111,128,886 - 111,145,480 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 113,652,625 - 113,669,398 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 114,029,987 - 114,032,241 (-) | NCBI | | MGSCv36 | mm8 | | MGSCv36 | 8 | 111,050,878 - 111,053,132 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 115,351,675 - 115,369,729 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | E1 | NCBI | | | | | cM Map | 8 | 57.97 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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.
Predicted Target Of
Count of predictions: | 134 | Count of miRNA genes: | 123 | Interacting mature miRNAs: | 127 | Transcripts: | ENSMUST00000127301, ENSMUST00000143719 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction |
4141435 | Fbtq3_m | femoral bone trait QTL 3 (mouse) | | | Not determined | | 8 | 100965309 | 130127694 | Mouse | 35673316 | Ari3_m | antibody response to influenza 3, day 15, IgM (mouse) | | | | | 8 | 109426632 | 113826632 | Mouse | 12904960 | Gmmq6_m | gastrocnemius muscle mass QTL 6 (mouse) | | | | | 8 | 111481497 | 130127694 | Mouse | 11252141 | Fdr2_m | fat response to dietary restriction 2 (mouse) | | | | | 8 | 98390634 | 130127694 | Mouse | 1302105 | Im1_m | Immunoregulatory 1 (mouse) | | | Not determined | | 8 | 99828531 | 130127694 | Mouse | 1301080 | Sluc9_m | susceptibility to lung cancer 9 (mouse) | | | Not determined | | 8 | 99828531 | 130127694 | Mouse | 1558875 | Eae31_m | experimental allergic encephalomyelitis susceptibility 31 (mouse) | | | Not determined | | 8 | 35109930 | 115563747 | Mouse | 36049782 | Arc2_m | antibody response to CHIKV 2, day 7, IgM (mouse) | | | | | 8 | 109426632 | 113826632 | Mouse | 36049783 | Arc3_m | antibody response to CHIKV 3, day 7, FRNT50 (mouse) | | | | | 8 | 109426632 | 113826632 | Mouse | 36049780 | Ars12_m | antibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse) | | | | | 8 | 109426632 | 113826632 | Mouse | 14746994 | Manh65_m | mandible shape 65 (mouse) | | | | | 8 | 106489629 | 130127694 | Mouse | 36049781 | Arc1_m | antibody response to CHIKV 1, day 7, IgG (mouse) | | | | | 8 | 109426632 | 113826632 | Mouse | 1301766 | Desp1_m | despair 1 (mouse) | | | Not determined | | 8 | 85486208 | 119486373 | Mouse | 1301253 | Skmw2_m | skeletal muscle weight 2 (mouse) | | | Not determined | | 8 | 86443553 | 120443701 | Mouse | 1301316 | Dntcs1_m | dental caries susceptibility 1 (mouse) | | | Not determined | | 8 | 103443553 | 127781786 | Mouse | 4140967 | Bmd39_m | bone mineral density 39 (mouse) | | | Not determined | | 8 | 32506572 | 117965439 | Mouse | 1357708 | Orq1_m | ovulation rate QTL 1 (mouse) | | | Not determined | | 8 | 71740461 | 124622354 | Mouse | 1300681 | Pgia22_m | proteoglycan induced arthritis 22 (mouse) | | | Not determined | | 8 | 102486208 | 116025457 | Mouse | 10755519 | Wbc1_m | white blood cell count 1 (mouse) | | | | | 8 | 82345783 | 116345783 | Mouse | 1301581 | Char2_m | P. chabaudi malaria resistance QTL 2 (mouse) | | | Not determined | | 8 | 79808806 | 113809031 | Mouse | 1357494 | Obsty2_m | obesity 2 (mouse) | | | Not determined | | 8 | 96245241 | 129745061 | Mouse | 10045619 | Heal14_m | wound healing/regeneration 14 (mouse) | | | Not determined | | 8 | 86443553 | 120443701 | Mouse | 12880431 | Fgf23lq2_m | FGF23 serum level QTL 2 (mouse) | | | | | 8 | 97626632 | 130127694 | Mouse | 10412274 | Leci1_m | leukocyte endothelial cell interactions 1 (mouse) | | | Not determined | | 8 | 110415083 | 130127694 | Mouse | 10755530 | Wbc2_m | white blood cell count 2 (mouse) | | | | | 8 | 81819296 | 115819296 | Mouse | 12904938 | Edlmmq7_m | extensor digitorum longus muscle mass QTL 7 (mouse) | | | | | 8 | 111481497 | 130127694 | Mouse | 10412273 | Fcd1_m | functional capillary density 1 (mouse) | | | Not determined | | 8 | 110415083 | 130127694 | Mouse | 1302049 | Heal1_m | wound healing/regeneration 1 (mouse) | | | Not determined | | 8 | 86443553 | 120443701 | Mouse | 27226796 | Scvln16_m | sacral vertebrae length 2, 16 week (mouse) | | | | | 8 | 89726628 | 130027694 | Mouse | 11079194 | Tpnr6_m | thermal pain response 6 (mouse) | | | | | 8 | 111166632 | 114956740 | Mouse | 27095912 | Pglq14_m | pelvic girdle length QTL 14, 16 week (mouse) | | | | | 8 | 74126628 | 126826739 | Mouse | 4142023 | W3q5_m | weight 3 weeks QTL 5 (mouse) | | | Not determined | | | 71740461 | 124622354 | Mouse | 1301099 | Cbm2_m | cerebellum weight 2 (mouse) | | | Not determined | | 8 | 79245241 | 113245331 | Mouse | 1301481 | Lith11_m | lithogenic gene 11 (mouse) | | | Not determined | | 8 | 98563635 | 130127694 | Mouse | 11532692 | Sluc38a_m | susceptibility to lung cancer 38a (mouse) | | | | | 8 | 105033977 | 130127694 | Mouse | 11532691 | Sluc38_m | susceptibility to lung cancer 38 (mouse) | | | | | 8 | 105033977 | 130127694 | Mouse |
BE691704 |
Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCm38 | 8 | 111,127,724 - 111,127,818 | UniSTS | GRCm38 | MGSCv37 | 8 | 113,651,624 - 113,651,718 | UniSTS | GRCm37 | Celera | 8 | 115,351,955 - 115,352,049 | UniSTS | | Cytogenetic Map | 8 | E1 | UniSTS | | Whitehead/MRC_RH | 8 | 1325.58 | UniSTS | |
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AU018056 |
Mouse Assembly | Chr | Position (strand) | Source | JBrowse |
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GRCm38 | 8 | 111,139,318 - 111,139,555 | UniSTS | GRCm38 | MGSCv37 | 8 | 113,663,218 - 113,663,455 | UniSTS | GRCm37 | Celera | 8 | 115,363,549 - 115,363,786 | UniSTS | | Cytogenetic Map | 8 | E1 | UniSTS | | Whitehead/MRC_RH | 8 | 1324.14 | UniSTS | |
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Ensembl Acc Id: |
ENSMUST00000127301 |
Type: |
CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 Ensembl | 8 | 111,855,352 - 111,872,231 (-) | Ensembl | GRCm38.p6 Ensembl | 8 | 111,128,886 - 111,145,459 (-) | Ensembl |
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Ensembl Acc Id: |
ENSMUST00000143719 |
Type: |
CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 Ensembl | 8 | 111,855,708 - 111,872,112 (-) | Ensembl | GRCm38.p6 Ensembl | 8 | 111,129,076 - 111,145,480 (-) | Ensembl |
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RefSeq Acc Id: |
NR_040363 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 | 8 | 111,854,076 - 111,872,130 (-) | NCBI | GRCm38 | 8 | 111,127,444 - 111,145,498 (-) | ENTREZGENE | Celera | 8 | 115,351,675 - 115,369,729 (-) | ENTREZGENE | cM Map | 8 | | ENTREZGENE |
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Sequence: |
TTCCGGCCGGCGCAGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGATGCGGGCCCCTGAGTCACTGTTGTAGGTCAAGATGAACACTAAACCA ACAGTCTGTCAGGCTGGGCTTTTGACATGGTTTATTTCCTCCTGAAACTCATCTGTTGCTGTTTCTTCTGCCATGTCTTCCTGCTAAGGGGAGACCTGTGAAAGGGTCAGGGGTTGCTCTAGAGCTAC CATTTCTGCTAACAACTTGCATCTACTCCTGAGAAGCCCAGCTCTACCACACTGGTGGATCAGATATTCTAGCCTGTCCAAGACTGGATGGGATACACCATTCTAAATCTGTTGGTACTCAGGAATCT TGGGAAACTGGTACCCCTGCCCAGAGCCCTCTCACCTCTATGGGGATATACAGCATGAAGCCTGGCTCTCCCGTGTGCGTCATACTCATCACCCGGATCCCATTTGCATAGCCCACACTCATCTCCTA CAAAGAAAAGGAAAGCAGTCAGTACTCGTCCCTCCTGACAGTCAAGAGACTGAGTCCCGAGGGGAGCCTGTCAGTACCCACCCTATGTTAACCCTGGAAGAGCTACAACCAAGGAAAGCATCTCTCTT TACCAGCTCATGCTAAAACATTGAGTTAGCCAAGCAGCGTTAGGAACAATGAAGACCAACCAAGTGTTTTCTCTGGAGGACTCTGTAAGACACATAAAGGACAATGCCTGCAGAATACAATTCATGCA CTCTGGGACCAAAAGCTCAGTTTCTAGTGTTACAGCTGCTCAGTCGCCTTGAAAGGGTCACTGATATAATACTGCTCTATGAAGGGAAGTGTAAGGCCAAGCAAGACAGCACTGAAACAATTCCACAT GAATTCTGACAAGGCATTTGACAGTCAGGTTGGATCATTTGTAAAGTACAGAGAAGACTGTAGAGGGATCTGTTCACCAACATGGAAGTTTTCTGTTGTTTTCTCTGCTTGGGAGAGCAGGAAATCAT TAAACAATCTGCTCTAAAAATCTCCACTTGGGTTTAAACTTCCAAGTTTCTCCATGCATGGTGCATGTCCAAAGTGGCTGTGTGACTGCTTCCTGCAAAGCGCTCAGTTATTCAGTGTAGTGTGTGCC AAGCAACTAGTTGTGTGTTGTCTAGGGTTCAGCTATCAATATACTATGAGAATAAAAACAAAACAGCAAATGCAAGGAGAAAAAACATCTGACCTCAGTGTGCATTTACTGTCACCTTAAGTTTAATT CAGGCGCTAGAGAAACCAATAAGTACACATACCTGACATTCAAAGACATTAAGTATACTTCAGGGAATACCCTAATCCTTACTAAATAAAGCAGACTTGGAAGTAAAAAATAAAAGTTGCTTGGTCAT TTTGCTTGCTTAATAAAGGTCAAAACACTGTTTAAGTATTAACACCATATTAAGAATATGAACCTGCCATCACTATAAAAGAAACATATTTAACATTTAAAAAAACAGAACTGCTAAGAATGTGGCTC AGTTGGCAGACTGCTTGCCTAGCATGCATGGAGCCATGGGTTTGATTCTCAGCACCATATAAACCCATTACACACACACACACACACACACACACACACACACACACACAGACACACACCCGCATTCC CAGCACTTGAGCAAGCTCGCAAGTGTAAGGTCATGCCCAGCTACATAACAAGTTTGAGACCTGCATGCACTACATGAGACACTGATCACAAACAATAAATGACTAGCACCTACCTTGCAGAAGAGCGT TGGAAAGTGATCTGGAGTCATAGGGGCATAGGACAGCTCAGATAGCACATCCACGGCTCGAGGGCCAATCAGATTGAGGGCTATAGGGTAAAGAACAAGAGATGTCCAGCCTCTCCAGAGAACAGCCT CTTCTGACCGTGTCCACTGTCCCCGGTTCTTTACCTGCTACTGTCATGAATACACTGACAACGTAAACGATAGTTTTCTAGTTTATAGTTCAAAGTCGGTCCATCCACGGCGGGCAGTAATTTCCCAT AGGCAAGTACATTTATCTCCCAGGTGATTAACTAACCACCATATTTACACAGGACCTGGTCTACAGCTGATGAGATATAAAAAATGGCCCTTTATTTAGGGTCCTGAGGTTCAATGGTAAGTACCTGG GCTCTGGCCCCCAGTCCACTGACAGAGCTGCTGAACGCAGCTGCTGACTGTGTGTGCTGGTGTGGTTCTTGCAGTGCACAAGAAGGGTGTATTTTATAGTCTCCTCTGCAGAAGATTAGGATCGAGAC CAAGACCTGACCAAGAGGTCACTTCCAGGGCTGGCCATACACCAAGCACTATAGTTCATCTTCCTACATGATGGAAGTGATCCCCATCACAAAACAGTGTCTAGAGAACTGTCTCTCCACCCTAGGCT CTGTTCCTTTGACAGAACTACACATAACTGCTCTAGTACAGGCTAGAAGACAACCAGTATTCAGTAATATTCTACACTTTGCCAAGCTAGCAGCAAGAAGCTAATCATGCTTTCTGCTAACGAGAGAG AATGAAGTCCTTGGTGAGATGAGCGGTTAATAAGATGAGTGCAAGTCACTTTTCTCCTTCCACTGTGGTTCCAGGGATTGGAACTGAATAAATAAATTGAATGGACAATTA
hide sequence
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RefSeq Acc Id: |
NR_040364 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Mouse Assembly | Chr | Position (strand) | Source |
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GRCm39 | 8 | 111,854,076 - 111,872,130 (-) | NCBI | GRCm38 | 8 | 111,127,444 - 111,145,498 (-) | ENTREZGENE | Celera | 8 | 115,351,675 - 115,369,729 (-) | ENTREZGENE | cM Map | 8 | | ENTREZGENE |
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Sequence: |
TTCCGGCCGGCGCAGACCCTCTTCAGCGGCTGGGCTGCCCTTCACTTCCGCCGGGCGTTGCTGAGCGCGCTGCCCGCGAGATGCGGGCCCCTGAGGAGACCTGTGAAAGGGTCAGGGGTTGCTCTAGA GCTACCATTTCTGCTAACAACTTGCATCTACTCCTGAGAAGCCCAGCTCTACCACACTGGTGGATCAGATATTCTAGCCTGTCCAAGACTGGATGGGATACACCATTCTAAATCTGTTGGTACTCAGG AATCTTGGGAAACTGGTACCCCTGCCCAGAGCCCTCTCACCTCTATGGGGATATACAGCATGAAGCCTGGCTCTCCCGTGTGCGTCATACTCATCACCCGGATCCCATTTGCATAGCCCACACTCATC TCCTACAAAGAAAAGGAAAGCAGTCAGTACTCGTCCCTCCTGACAGTCAAGAGACTGAGTCCCGAGGGGAGCCTGTCAGTACCCACCCTATGTTAACCCTGGAAGAGCTACAACCAAGGAAAGCATCT CTCTTTACCAGCTCATGCTAAAACATTGAGTTAGCCAAGCAGCGTTAGGAACAATGAAGACCAACCAAGTGTTTTCTCTGGAGGACTCTGTAAGACACATAAAGGACAATGCCTGCAGAATACAATTC ATGCACTCTGGGACCAAAAGCTCAGTTTCTAGTGTTACAGCTGCTCAGTCGCCTTGAAAGGGTCACTGATATAATACTGCTCTATGAAGGGAAGTGTAAGGCCAAGCAAGACAGCACTGAAACAATTC CACATGAATTCTGACAAGGCATTTGACAGTCAGGTTGGATCATTTGTAAAGTACAGAGAAGACTGTAGAGGGATCTGTTCACCAACATGGAAGTTTTCTGTTGTTTTCTCTGCTTGGGAGAGCAGGAA ATCATTAAACAATCTGCTCTAAAAATCTCCACTTGGGTTTAAACTTCCAAGTTTCTCCATGCATGGTGCATGTCCAAAGTGGCTGTGTGACTGCTTCCTGCAAAGCGCTCAGTTATTCAGTGTAGTGT GTGCCAAGCAACTAGTTGTGTGTTGTCTAGGGTTCAGCTATCAATATACTATGAGAATAAAAACAAAACAGCAAATGCAAGGAGAAAAAACATCTGACCTCAGTGTGCATTTACTGTCACCTTAAGTT TAATTCAGGCGCTAGAGAAACCAATAAGTACACATACCTGACATTCAAAGACATTAAGTATACTTCAGGGAATACCCTAATCCTTACTAAATAAAGCAGACTTGGAAGTAAAAAATAAAAGTTGCTTG GTCATTTTGCTTGCTTAATAAAGGTCAAAACACTGTTTAAGTATTAACACCATATTAAGAATATGAACCTGCCATCACTATAAAAGAAACATATTTAACATTTAAAAAAACAGAACTGCTAAGAATGT GGCTCAGTTGGCAGACTGCTTGCCTAGCATGCATGGAGCCATGGGTTTGATTCTCAGCACCATATAAACCCATTACACACACACACACACACACACACACACACACACACACACAGACACACACCCGC ATTCCCAGCACTTGAGCAAGCTCGCAAGTGTAAGGTCATGCCCAGCTACATAACAAGTTTGAGACCTGCATGCACTACATGAGACACTGATCACAAACAATAAATGACTAGCACCTACCTTGCAGAAG AGCGTTGGAAAGTGATCTGGAGTCATAGGGGCATAGGACAGCTCAGATAGCACATCCACGGCTCGAGGGCCAATCAGATTGAGGGCTATAGGGTAAAGAACAAGAGATGTCCAGCCTCTCCAGAGAAC AGCCTCTTCTGACCGTGTCCACTGTCCCCGGTTCTTTACCTGCTACTGTCATGAATACACTGACAACGTAAACGATAGTTTTCTAGTTTATAGTTCAAAGTCGGTCCATCCACGGCGGGCAGTAATTT CCCATAGGCAAGTACATTTATCTCCCAGGTGATTAACTAACCACCATATTTACACAGGACCTGGTCTACAGCTGATGAGATATAAAAAATGGCCCTTTATTTAGGGTCCTGAGGTTCAATGGTAAGTA CCTGGGCTCTGGCCCCCAGTCCACTGACAGAGCTGCTGAACGCAGCTGCTGACTGTGTGTGCTGGTGTGGTTCTTGCAGTGCACAAGAAGGGTGTATTTTATAGTCTCCTCTGCAGAAGATTAGGATC GAGACCAAGACCTGACCAAGAGGTCACTTCCAGGGCTGGCCATACACCAAGCACTATAGTTCATCTTCCTACATGATGGAAGTGATCCCCATCACAAAACAGTGTCTAGAGAACTGTCTCTCCACCCT AGGCTCTGTTCCTTTGACAGAACTACACATAACTGCTCTAGTACAGGCTAGAAGACAACCAGTATTCAGTAATATTCTACACTTTGCCAAGCTAGCAGCAAGAAGCTAATCATGCTTTCTGCTAACGA GAGAGAATGAAGTCCTTGGTGAGATGAGCGGTTAATAAGATGAGTGCAAGTCACTTTTCTCCTTCCACTGTGGTTCCAGGGATTGGAACTGAATAAATAAATTGAATGGACAATTA
hide sequence
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RGD ID: | 15093508 |
Promoter ID: | EPDNEWNC_M1426 |
Type: | multiple initiation site |
Name: | 9430091E24Rik_1 |
Description: | RIKEN cDNA 9430091E24 gene [Source:MGISymbol;Acc:MGI:1924618] |
SO ACC ID: | SO:0000170 |
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) |
Experiment Methods: | Single-end sequencing. |
Position: | Mouse Assembly | Chr | Position (strand) | Source |
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GRCm38 | 8 | 111,145,474 - 111,145,534 | EPDNEWNC |
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RGD ID: | 8668293 |
Promoter ID: | EPDNEW_M12178 |
Type: | initiation region |
Name: | 9430091E24Rik_1 |
Description: | Mus musculus RIKEN cDNA 9430091E24 gene , transcript variant2, long non-coding RNA. |
SO ACC ID: | SO:0000170 |
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) |
Experiment Methods: | Single-end sequencing. |
Position: | Mouse Assembly | Chr | Position (strand) | Source |
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GRCm38 | 8 | 111,145,574 - 111,145,634 | EPDNEW |
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RGD ID: | 6842567 |
Promoter ID: | MM_KWN:55768 |
Type: | CpG-Island |
SO ACC ID: | SO:0000170 |
Source: | MPROMDB |
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung, MEF_B4 |
Transcripts: | AK080922_9430091E24RIK, UC009NLX.1, UC009NLY.1 |
Position: | Mouse Assembly | Chr | Position (strand) | Source |
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MGSCv36 | 8 | 113,669,471 - 113,670,457 (-) | MPROMDB |
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