9430091E24Rik (RIKEN cDNA 9430091E24 gene) - Rat Genome Database

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Gene: 9430091E24Rik (RIKEN cDNA 9430091E24 gene) Mus musculus
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Symbol: 9430091E24Rik
Name: RIKEN cDNA 9430091E24 gene
RGD ID: 1622655
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC434350
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,854,076 - 111,872,130 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,855,352 - 111,872,231 (-)EnsemblGRCm39 Ensembl
GRCm388111,127,444 - 111,145,498 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,128,886 - 111,145,480 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,652,625 - 113,669,398 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,029,987 - 114,032,241 (-)NCBIMGSCv36mm8
MGSCv368111,050,878 - 111,053,132 (-)NCBIMGSCv36mm8
Celera8115,351,675 - 115,369,729 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
9430091E24RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
9430091E24RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
9430091E24RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  



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Variants in 9430091E24Rik
1230 total Variants

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:123
Interacting mature miRNAs:127
Transcripts:ENSMUST00000127301, ENSMUST00000143719
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
35673316Ari3_mantibody response to influenza 3, day 15, IgM (mouse)8109426632113826632Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
36049782Arc2_mantibody response to CHIKV 2, day 7, IgM (mouse)8109426632113826632Mouse
36049783Arc3_mantibody response to CHIKV 3, day 7, FRNT50 (mouse)8109426632113826632Mouse
36049780Ars12_mantibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse)8109426632113826632Mouse

1 to 10 of 36 rows
BE691704  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388111,127,724 - 111,127,818UniSTSGRCm38
MGSCv378113,651,624 - 113,651,718UniSTSGRCm37
Celera8115,351,955 - 115,352,049UniSTS
Cytogenetic Map8E1UniSTS
Whitehead/MRC_RH81325.58UniSTS
AU018056  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388111,139,318 - 111,139,555UniSTSGRCm38
MGSCv378113,663,218 - 113,663,455UniSTSGRCm37
Celera8115,363,549 - 115,363,786UniSTS
Cytogenetic Map8E1UniSTS
Whitehead/MRC_RH81324.14UniSTS







Ensembl Acc Id: ENSMUST00000127301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,855,352 - 111,872,231 (-)Ensembl
GRCm38.p6 Ensembl8111,128,886 - 111,145,459 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,855,708 - 111,872,112 (-)Ensembl
GRCm38.p6 Ensembl8111,129,076 - 111,145,480 (-)Ensembl
RefSeq Acc Id: NR_040363
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,854,076 - 111,872,130 (-)NCBI
GRCm388111,127,444 - 111,145,498 (-)ENTREZGENE
Celera8115,351,675 - 115,369,729 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_040364
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,854,076 - 111,872,130 (-)NCBI
GRCm388111,127,444 - 111,145,498 (-)ENTREZGENE
Celera8115,351,675 - 115,369,729 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RGD ID:15093508
Promoter ID:EPDNEWNC_M1426
Type:multiple initiation site
Name:9430091E24Rik_1
Description:RIKEN cDNA 9430091E24 gene [Source:MGISymbol;Acc:MGI:1924618]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388111,145,474 - 111,145,534EPDNEWNC
RGD ID:8668293
Promoter ID:EPDNEW_M12178
Type:initiation region
Name:9430091E24Rik_1
Description:Mus musculus RIKEN cDNA 9430091E24 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388111,145,574 - 111,145,634EPDNEW
RGD ID:6842567
Promoter ID:MM_KWN:55768
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:AK080922_9430091E24RIK,   UC009NLX.1,   UC009NLY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368113,669,471 - 113,670,457 (-)MPROMDB


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000084808 Ensembl
MGD MGI:1924618 ENTREZGENE
NCBI Gene 9430091E24Rik ENTREZGENE
PhenoGen 9430091E24Rik PhenoGen
RNAcentral URS000075E541 RNACentral
  URS000075E7F3 RNACentral
  URS0000EF2D6A RNACentral
  URS0000EF5985 RNACentral