4931414P19Rik (RIKEN cDNA 4931414P19 gene) - Rat Genome Database

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Gene: 4931414P19Rik (RIKEN cDNA 4931414P19 gene) Mus musculus
Analyze
Symbol: 4931414P19Rik
Name: RIKEN cDNA 4931414P19 gene
RGD ID: 1622251
MGI Page MGI
Description: Acts upstream of or within cell differentiation and positive regulation of gene expression. Predicted to be located in extracellular region. Orthologous to human C14orf93 (chromosome 14 open reading frame 93).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC74359; Rtfc; uncharacterized protein C14orf93 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,821,119 - 54,843,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,821,120 - 54,843,450 (-)EnsemblGRCm39 Ensembl
GRCm381454,583,662 - 54,606,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,583,663 - 54,605,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,202,500 - 55,224,745 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,537,868 - 53,560,113 (-)NCBIMGSCv36mm8
Celera1452,372,626 - 52,394,656 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:28230092   PMID:37070770  


Genomics

Comparative Map Data
4931414P19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,821,119 - 54,843,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,821,120 - 54,843,450 (-)EnsemblGRCm39 Ensembl
GRCm381454,583,662 - 54,606,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,583,663 - 54,605,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,202,500 - 55,224,745 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,537,868 - 53,560,113 (-)NCBIMGSCv36mm8
Celera1452,372,626 - 52,394,656 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.85NCBI
C14orf93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,985,894 - 23,010,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,985,894 - 23,010,166 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,455,103 - 23,479,352 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,525,951 - 22,549,192 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,525,950 - 22,549,192NCBI
Celera143,319,000 - 3,342,250 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,573,344 - 3,596,639 (-)NCBIHuRef
CHM1_11423,454,741 - 23,477,990 (-)NCBICHM1_1
T2T-CHM13v2.01417,186,512 - 17,210,763 (-)NCBIT2T-CHM13v2.0
C15h14orf93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,007,591 - 32,034,337 (-)NCBIGRCr8
mRatBN7.21528,037,567 - 28,064,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,037,574 - 28,064,274 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,876,988 - 29,903,676 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,024,204 - 31,050,889 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,273,748 - 29,300,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,225,172 - 33,250,609 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,224,896 - 33,250,546 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,109,226 - 37,143,944 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,656,277 - 32,688,050 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1527,616,290 - 27,642,915 (-)NCBICelera
Cytogenetic Map15p13NCBI
CUNH14orf93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,290,550 - 37,314,598 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,290,615 - 37,315,297 (+)NCBIChiLan1.0ChiLan1.0
C15H14orf93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,419,703 - 24,431,943 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,636,188 - 23,648,298 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,807,076 - 3,830,892 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,905,028 - 21,928,242 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,905,028 - 21,928,242 (-)Ensemblpanpan1.1panPan2
C8H14orf93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,305,532 - 3,316,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,305,751 - 3,316,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,253,297 - 3,264,153 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,413,133 - 3,423,991 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,413,664 - 3,437,322 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,104,064 - 3,114,923 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,165,789 - 3,176,644 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,427,852 - 3,438,706 (-)NCBIUU_Cfam_GSD_1.0
CUNH14orf93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,060,954 - 35,084,717 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,316,789 - 1,328,059 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,304,357 - 1,327,726 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H14orf93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,045,686 - 76,058,891 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,033,750 - 76,061,877 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH14orf93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,356,885 - 23,381,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,355,798 - 23,369,839 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605923,038,445 - 23,063,808 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH14orf93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,524,499 - 9,548,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,524,566 - 9,548,650 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4931414P19Rik
541 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:243
Count of miRNA genes:178
Interacting mature miRNAs:194
Transcripts:ENSMUST00000022786
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000022786   ⟹   ENSMUSP00000022786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,821,120 - 54,843,450 (-)Ensembl
GRCm38.p6 Ensembl1454,583,663 - 54,605,993 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227280   ⟹   ENSMUSP00000154754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,821,733 - 54,822,466 (-)Ensembl
GRCm38.p6 Ensembl1454,584,276 - 54,585,009 (-)Ensembl
Ensembl Acc Id: ENSMUST00000228422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,822,121 - 54,822,956 (-)Ensembl
GRCm38.p6 Ensembl1454,584,664 - 54,585,499 (-)Ensembl
RefSeq Acc Id: NM_028890   ⟹   NP_083166
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391454,821,120 - 54,843,365 (-)NCBI
GRCm381454,583,663 - 54,605,908 (-)NCBI
MGSCv371455,202,500 - 55,224,745 (-)RGD
Celera1452,372,626 - 52,394,656 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006519618   ⟹   XP_006519681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391454,821,119 - 54,843,389 (-)NCBI
GRCm381454,583,662 - 54,605,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006519620   ⟹   XP_006519683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391454,821,119 - 54,836,777 (-)NCBI
GRCm381454,583,662 - 54,599,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245210   ⟹   XP_011243512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391454,821,119 - 54,836,777 (-)NCBI
GRCm381454,583,662 - 54,599,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158879   ⟹   XP_036014772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391454,821,119 - 54,839,193 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158880   ⟹   XP_036014773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391454,821,119 - 54,843,450 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083166   ⟸   NM_028890
- Peptide Label: precursor
- UniProtKB: Q8K2W9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006519681   ⟸   XM_006519618
- Peptide Label: isoform X1
- UniProtKB: Q8K2W9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006519683   ⟸   XM_006519620
- Peptide Label: isoform X1
- UniProtKB: Q8K2W9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011243512   ⟸   XM_011245210
- Peptide Label: isoform X1
- UniProtKB: Q8K2W9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000154754   ⟸   ENSMUST00000227280
Ensembl Acc Id: ENSMUSP00000022786   ⟸   ENSMUST00000022786
RefSeq Acc Id: XP_036014773   ⟸   XM_036158880
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036014772   ⟸   XM_036158879
- Peptide Label: isoform X1
- UniProtKB: Q8K2W9 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K2W9-F1-model_v2 AlphaFold Q8K2W9 1-541 view protein structure

Promoters
RGD ID:8682352
Promoter ID:EPDNEW_M19206
Type:single initiation site
Name:4931414P19Rik_1
Description:Mus musculus RIKEN cDNA 4931414P19 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381454,605,919 - 54,605,979EPDNEW
RGD ID:6824584
Promoter ID:MM_KWN:16884
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_028890
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361455,224,646 - 55,225,147 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921609 AgrOrtholog
Ensembl Genes ENSMUSG00000022179 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022786 ENTREZGENE
  ENSMUST00000022786.6 UniProtKB/Swiss-Prot
  ENSMUST00000227280.2 UniProtKB/TrEMBL
InterPro DUF4616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74359 UniProtKB/Swiss-Prot
MGD MGI:1921609 ENTREZGENE
NCBI Gene 74359 ENTREZGENE
PANTHER PTHR14375 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIMILAR TO RIKEN CDNA 4931414P19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 4931414P19Rik PhenoGen
UniProt A0A2I3BS37_MOUSE UniProtKB/TrEMBL
  CN093_MOUSE UniProtKB/Swiss-Prot
  Q3TR30_MOUSE UniProtKB/TrEMBL
  Q8K2W9 ENTREZGENE