Stpg3 (sperm tail PG rich repeat containing 3) - Rat Genome Database

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Gene: Stpg3 (sperm tail PG rich repeat containing 3) Mus musculus
Analyze
Symbol: Stpg3
Name: sperm tail PG rich repeat containing 3
RGD ID: 1621475
MGI Page MGI
Description: Predicted to be active in cytoskeleton. Orthologous to human STPG3 (sperm-tail PG-rich repeat containing 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933433C11Rik; hypothetical protein LOC74472; RIKEN cDNA 4933433C11 gene; RP23-132N23.5; sperm-tail PG-rich repeat-containing protein 3; uncharacterized protein C9orf173 homolog; uncharacterized protein LOC74472
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,102,219 - 25,108,680 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,102,219 - 25,104,649 (-)EnsemblGRCm39 Ensembl
GRCm38225,212,207 - 25,218,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,212,207 - 25,214,637 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,068,079 - 25,070,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,034,216 - 25,036,640 (-)NCBIMGSCv36mm8
Celera224,940,334 - 24,942,405 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoskeleton  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21677750   PMID:21873635   PMID:32561905  


Genomics

Comparative Map Data
Stpg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,102,219 - 25,108,680 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,102,219 - 25,104,649 (-)EnsemblGRCm39 Ensembl
GRCm38225,212,207 - 25,218,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,212,207 - 25,214,637 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,068,079 - 25,070,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,034,216 - 25,036,640 (-)NCBIMGSCv36mm8
Celera224,940,334 - 24,942,405 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.07NCBI
STPG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,251,286 - 137,253,483 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,251,261 - 137,253,483 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,145,738 - 140,147,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,265,551 - 139,267,755 (+)NCBINCBI36Build 36hg18NCBI36
Celera9110,661,314 - 110,663,520 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,605,025 - 109,607,249 (+)NCBIHuRef
CHM1_19140,294,447 - 140,296,669 (+)NCBICHM1_1
T2T-CHM13v2.09149,488,954 - 149,491,153 (+)NCBIT2T-CHM13v2.0
Stpg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,426,283 - 28,432,857 (-)NCBIGRCr8
mRatBN7.238,028,122 - 8,030,546 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,028,131 - 8,034,601 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,132,811 - 11,135,220 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,719,040 - 19,721,449 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,908,883 - 17,911,292 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,431,757 - 2,434,258 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,432,690 - 2,434,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,413,055 - 2,415,557 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,378,151 - 3,379,718 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera32,854,726 - 2,857,227 (-)NCBICelera
Cytogenetic Map3p13NCBI
Stpg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,245,861 - 5,247,582 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,245,861 - 5,247,582 (+)NCBIChiLan1.0ChiLan1.0
STPG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,146,238 - 2,151,762 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,148,438 - 2,154,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,310,511 - 108,314,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,278,739 - 137,282,670 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,278,844 - 137,282,670 (+)Ensemblpanpan1.1panPan2
STPG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,424,901 - 48,426,814 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,609,375 - 47,613,145 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,284,231 - 49,287,977 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,286,196 - 49,287,912 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,060,637 - 48,064,383 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,361,423 - 48,363,207 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,406,345 - 48,410,142 (-)NCBIUU_Cfam_GSD_1.0
Stpg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,632,392 - 202,634,287 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669740,694 - 742,142 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669740,953 - 742,571 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STPG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,128,289 - 314,129,751 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STPG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112934,282 - 937,697 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660584,370,359 - 4,372,686 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stpg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760705,486 - 706,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760703,733 - 707,880 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:646
Count of miRNA genes:318
Interacting mature miRNAs:332
Transcripts:ENSMUST00000043774, ENSMUST00000114363, ENSMUST00000124661, ENSMUST00000149509, ENSMUST00000155706
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000043774   ⟹   ENSMUSP00000037603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,102,571 - 25,104,642 (-)Ensembl
GRCm38.p6 Ensembl225,212,559 - 25,214,630 (-)Ensembl
Ensembl Acc Id: ENSMUST00000114363   ⟹   ENSMUSP00000110003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,102,774 - 25,104,649 (-)Ensembl
GRCm38.p6 Ensembl225,212,762 - 25,214,637 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,102,220 - 25,104,643 (-)Ensembl
GRCm38.p6 Ensembl225,212,208 - 25,214,631 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,102,930 - 25,104,603 (-)Ensembl
GRCm38.p6 Ensembl225,212,918 - 25,214,591 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,102,219 - 25,103,663 (-)Ensembl
GRCm38.p6 Ensembl225,212,207 - 25,213,651 (-)Ensembl
RefSeq Acc Id: NM_001399439   ⟹   NP_001386368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,102,219 - 25,108,680 (-)NCBI
RefSeq Acc Id: NM_028961   ⟹   NP_083237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,102,219 - 25,104,632 (-)NCBI
GRCm38225,212,559 - 25,214,630 (-)NCBI
MGSCv37225,068,079 - 25,070,150 (-)RGD
Celera224,940,334 - 24,942,405 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239203   ⟹   XP_011237505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,102,219 - 25,104,662 (-)NCBI
GRCm38225,212,207 - 25,214,650 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083237   ⟸   NM_028961
- UniProtKB: A2RSX4 (UniProtKB/TrEMBL),   Q8CDQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237505   ⟸   XM_011239203
- Peptide Label: isoform X1
- UniProtKB: Q8CDQ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000110003   ⟸   ENSMUST00000114363
Ensembl Acc Id: ENSMUSP00000037603   ⟸   ENSMUST00000043774
RefSeq Acc Id: NP_001386368   ⟸   NM_001399439
- UniProtKB: A2RSX4 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2RSX4-F1-model_v2 AlphaFold A2RSX4 1-306 view protein structure

Promoters
RGD ID:6832355
Promoter ID:MM_KWN:28101
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000027718
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,068,741 - 25,069,241 (-)MPROMDB
RGD ID:6876554
Promoter ID:EPDNEW_M1728
Type:multiple initiation site
Name:Stpg3_1
Description:Mus musculus sperm tail PG rich repeat containing 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,214,588 - 25,214,648EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921722 AgrOrtholog
Ensembl Genes ENSMUSG00000036770 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043774 ENTREZGENE
  ENSMUST00000043774.11 UniProtKB/Swiss-Prot
  ENSMUST00000114363.2 UniProtKB/TrEMBL
InterPro SHIPPO-rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74472 UniProtKB/Swiss-Prot
MGD MGI:1921722 ENTREZGENE
NCBI Gene 74472 ENTREZGENE
Pfam SHIPPO-rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stpg3 PhenoGen
UniProt A2RSX4 ENTREZGENE
  Q8CDQ3 ENTREZGENE, UniProtKB/TrEMBL
  STPG3_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-10 Stpg3  sperm tail PG rich repeat containing 3  4933433C11Rik  RIKEN cDNA 4933433C11 gene  Symbol and/or name change 5135510 APPROVED