4932414N04Rik (RIKEN cDNA 4932414N04 gene) - Rat Genome Database

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Gene: 4932414N04Rik (RIKEN cDNA 4932414N04 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 4932414N04Rik
Name: RIKEN cDNA 4932414N04 gene
RGD ID: 1621470
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC75721; RP23-459M13.1; uncharacterized protein LOC75721
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39268,487,135 - 68,578,876 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl268,486,830 - 68,578,811 (+)EnsemblGRCm39 Ensembl
GRCm38268,656,791 - 68,748,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl268,656,486 - 68,748,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv37268,495,941 - 68,586,522 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36268,458,723 - 68,549,304 (+)NCBIMGSCv36mm8
Celera270,325,481 - 70,418,090 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map239.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21677750   PMID:30973865   PMID:38355793  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:155
Interacting mature miRNAs:159
Transcripts:ENSMUST00000055930, ENSMUST00000112332, ENSMUST00000125621, ENSMUST00000128259, ENSMUST00000135023
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
13432174Actres5_mactivity response to ethanol/saline 5 (mouse)25989228769792287Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
13432184Actdes1_mactivity chamber total difference ethanol/saline 1 (mouse)25939228769292287Mouse
13506939Pbwg1.12_mpostnatal body weight growth 1.12 (mouse)26513241268703425Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
1301059Hrtfm1_mheart failure modifier 1 (mouse)Not determined26759194074964933Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse

Markers in Region
AU022702  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38268,741,878 - 68,741,965UniSTSGRCm38
MGSCv37268,579,935 - 68,580,022UniSTSGRCm37
Celera270,411,503 - 70,411,590UniSTS
Cytogenetic Map2C2UniSTS
Whitehead/MRC_RH21079.51UniSTS
AU022702  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38268,741,710 - 68,741,952UniSTSGRCm38
MGSCv37268,579,767 - 68,580,009UniSTSGRCm37
Celera270,411,335 - 70,411,577UniSTS
Cytogenetic Map2C2UniSTS
Whitehead/MRC_RH21079.3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000055930   ⟹   ENSMUSP00000059809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl268,490,186 - 68,578,809 (+)Ensembl
GRCm38.p6 Ensembl268,659,842 - 68,748,465 (+)Ensembl
Ensembl Acc Id: ENSMUST00000112332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl268,488,257 - 68,499,133 (+)Ensembl
GRCm38.p6 Ensembl268,657,913 - 68,668,789 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125621   ⟹   ENSMUSP00000121558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl268,486,830 - 68,518,659 (+)Ensembl
GRCm38.p6 Ensembl268,656,486 - 68,688,315 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128259   ⟹   ENSMUSP00000135792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl268,488,228 - 68,578,811 (+)Ensembl
GRCm38.p6 Ensembl268,657,884 - 68,748,467 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl268,546,635 - 68,547,654 (+)Ensembl
GRCm38.p6 Ensembl268,716,291 - 68,717,310 (+)Ensembl
RefSeq Acc Id: NM_183113   ⟹   NP_898936
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39268,488,228 - 68,578,809 (+)NCBI
GRCm38268,657,884 - 68,748,465 (+)NCBI
MGSCv37268,495,941 - 68,586,522 (+)RGD
Celera270,325,481 - 70,418,090 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500335   ⟹   XP_006500398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39268,487,135 - 68,578,876 (+)NCBI
GRCm38268,656,791 - 68,748,532 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500336   ⟹   XP_006500399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39268,488,253 - 68,578,876 (+)NCBI
GRCm38268,657,909 - 68,748,532 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319307   ⟹   XP_017174796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39268,487,136 - 68,578,876 (+)NCBI
GRCm38268,656,792 - 68,748,532 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319308   ⟹   XP_017174797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39268,488,257 - 68,578,876 (+)NCBI
GRCm38268,657,913 - 68,748,532 (+)NCBI
Sequence:
RefSeq Acc Id: NP_898936   ⟸   NM_183113
- UniProtKB: Q8CEQ9 (UniProtKB/TrEMBL),   H3BLH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500398   ⟸   XM_006500335
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006500399   ⟸   XM_006500336
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017174796   ⟸   XM_017319307
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017174797   ⟸   XM_017319308
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000121558   ⟸   ENSMUST00000125621
Ensembl Acc Id: ENSMUSP00000059809   ⟸   ENSMUST00000055930
Ensembl Acc Id: ENSMUSP00000135792   ⟸   ENSMUST00000128259
Protein Domains
DUF3496

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CEQ9-F1-model_v2 AlphaFold Q8CEQ9 1-752 view protein structure

Promoters
RGD ID:6877484
Promoter ID:EPDNEW_M2192
Type:multiple initiation site
Name:4932414N04Rik_1
Description:Mus musculus RIKEN cDNA 4932414N04 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38268,657,913 - 68,657,973EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000079324 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055930.6 UniProtKB/TrEMBL
  ENSMUST00000125621.2 UniProtKB/TrEMBL
  ENSMUST00000128259 ENTREZGENE
  ENSMUST00000128259.9 UniProtKB/TrEMBL
InterPro Ankyrin_repeat_domain UniProtKB/TrEMBL
  DUF3496 UniProtKB/TrEMBL
KEGG Report mmu:75721 UniProtKB/TrEMBL
MGD MGI:1922971 ENTREZGENE
NCBI Gene 75721 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN 36-RELATED UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam DUF3496 UniProtKB/TrEMBL
PhenoGen 4932414N04Rik PhenoGen
UniProt A2AQL4_MOUSE UniProtKB/TrEMBL
  H3BLH7 ENTREZGENE
  Q8CEQ9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary H3BLH7 UniProtKB/TrEMBL