4930447C04Rik (RIKEN cDNA 4930447C04 gene) - Rat Genome Database

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Gene: 4930447C04Rik (RIKEN cDNA 4930447C04 gene) Mus musculus
Analyze
Symbol: 4930447C04Rik
Name: RIKEN cDNA 4930447C04 gene
RGD ID: 1620733
MGI Page MGI
Description: Involved in meiosis I; oogenesis; and spermatogenesis. Located in central element. Is expressed in several structures, including genitourinary system; intestine; liver; lung; and retina. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 18 and spermatogenic failure 52. Orthologous to human C14orf39 (chromosome 14 open reading frame 39).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4921504I02Rik; A930035O15Rik; Si; Six; Six6 antisense; Six6 opposite strand transcript 1; six6 opposite strand transcript 1 homolog; Six6as; Six6OS; Six6os1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391272,926,967 - 72,964,742 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1272,927,883 - 72,987,548 (-)EnsemblGRCm39 Ensembl
GRCm381272,880,193 - 72,917,957 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1272,881,109 - 72,940,774 (-)EnsemblGRCm38mm10GRCm38
MGSCv371273,982,096 - 74,018,752 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361273,799,947 - 73,836,603 (-)NCBIMGSCv36mm8
Celera1273,997,662 - 74,034,381 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1230.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
central element  (IBA,IDA)
chromosome  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15703187   PMID:16141072   PMID:16141073   PMID:18287559   PMID:20833366  
PMID:21873635   PMID:27796301   PMID:30272023   PMID:30746471   PMID:32325033   PMID:32845237   PMID:32917591   PMID:33508233   PMID:34969823   PMID:36440627   PMID:38355793  


Genomics

Comparative Map Data
4930447C04Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391272,926,967 - 72,964,742 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1272,927,883 - 72,987,548 (-)EnsemblGRCm39 Ensembl
GRCm381272,880,193 - 72,917,957 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1272,881,109 - 72,940,774 (-)EnsemblGRCm38mm10GRCm38
MGSCv371273,982,096 - 74,018,752 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361273,799,947 - 73,836,603 (-)NCBIMGSCv36mm8
Celera1273,997,662 - 74,034,381 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1230.3NCBI
C14orf39
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381460,435,956 - 60,515,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1460,396,469 - 60,515,543 (-)EnsemblGRCh38hg38GRCh38
GRCh371460,902,674 - 60,952,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361459,972,428 - 60,022,502 (-)NCBINCBI36Build 36hg18NCBI36
Build 341459,972,427 - 60,022,502NCBI
Celera1440,952,829 - 41,002,917 (-)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1441,066,304 - 41,116,353 (-)NCBIHuRef
CHM1_11460,841,920 - 60,891,999 (-)NCBICHM1_1
T2T-CHM13v2.01454,642,261 - 54,705,881 (-)NCBIT2T-CHM13v2.0
Six6os1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8697,314,829 - 97,351,069 (-)NCBIGRCr8
mRatBN7.2691,579,185 - 91,615,183 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl691,579,325 - 91,615,148 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0695,761,718 - 95,797,314 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl695,762,332 - 95,796,502 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06105,199,542 - 105,234,535 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4695,303,860 - 95,338,272 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera690,043,192 - 90,079,162 (-)NCBICelera
Cytogenetic Map6q24NCBI
CUNH14orf39
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554669,157,944 - 9,195,226 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554669,158,022 - 9,194,088 (+)NCBIChiLan1.0ChiLan1.0
C15H14orf39
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21561,570,322 - 61,620,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11460,786,836 - 60,836,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01441,040,315 - 41,090,267 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11459,303,152 - 59,352,973 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1459,304,040 - 59,351,956 (-)Ensemblpanpan1.1panPan2
C8H14orf39
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1835,486,476 - 35,542,214 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl835,487,228 - 35,542,218 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha835,240,462 - 35,295,944 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0835,720,123 - 35,775,616 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl835,720,696 - 35,775,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1835,331,843 - 35,387,333 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0835,409,832 - 35,465,550 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0835,768,864 - 35,824,350 (-)NCBIUU_Cfam_GSD_1.0
CUNH14orf39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864069,496,271 - 69,531,605 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364954,660,641 - 4,694,402 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364954,660,616 - 4,695,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1H14orf39
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1189,407,490 - 189,470,541 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11189,330,137 - 189,471,874 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21210,515,496 - 210,580,825 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH14orf39
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12437,596,061 - 37,707,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2437,626,089 - 37,676,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605325,872,145 - 25,923,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH14orf39
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473440,656,132 - 40,702,148 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473440,656,054 - 40,701,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4930447C04Rik
1179 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1093
Count of miRNA genes:555
Interacting mature miRNAs:655
Transcripts:ENSMUST00000044000, ENSMUST00000110489, ENSMUST00000130635, ENSMUST00000131033, ENSMUST00000132016, ENSMUST00000132067, ENSMUST00000132901, ENSMUST00000136075, ENSMUST00000143960, ENSMUST00000145815, ENSMUST00000156930
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse

Markers in Region
Six6os1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12C3UniSTS
cM Map12 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_029444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY576418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK005232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK005233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000044000   ⟹   ENSMUSP00000035376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,927,883 - 72,964,680 (-)Ensembl
GRCm38.p6 Ensembl1272,881,109 - 72,917,906 (-)Ensembl
Ensembl Acc Id: ENSMUST00000110489   ⟹   ENSMUSP00000106115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,927,883 - 72,964,534 (-)Ensembl
GRCm38.p6 Ensembl1272,881,109 - 72,917,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130635   ⟹   ENSMUSP00000120109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,959,961 - 72,984,751 (-)Ensembl
GRCm38.p6 Ensembl1272,913,187 - 72,937,977 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131033   ⟹   ENSMUSP00000119777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,953,008 - 72,964,631 (-)Ensembl
GRCm38.p6 Ensembl1272,906,234 - 72,917,857 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,939,698 - 72,953,045 (-)Ensembl
GRCm38.p6 Ensembl1272,892,924 - 72,906,271 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132067   ⟹   ENSMUSP00000118104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,959,965 - 72,986,857 (-)Ensembl
GRCm38.p6 Ensembl1272,913,191 - 72,940,083 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,939,644 - 72,953,247 (-)Ensembl
GRCm38.p6 Ensembl1272,892,870 - 72,906,473 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136075   ⟹   ENSMUSP00000121857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,958,433 - 72,987,548 (-)Ensembl
GRCm38.p6 Ensembl1272,911,659 - 72,940,774 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143960   ⟹   ENSMUSP00000116391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1272,939,590 - 72,953,051 (-)Ensembl
GRCm38.p6 Ensembl1272,892,816 - 72,906,277 (-)Ensembl
RefSeq Acc Id: NM_029444   ⟹   NP_083720
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,927,883 - 72,964,539 (-)NCBI
GRCm381272,881,109 - 72,917,765 (-)NCBI
MGSCv371273,982,096 - 74,018,752 (-)RGD
Celera1273,997,662 - 74,034,381 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011244200   ⟹   XP_011242502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244201   ⟹   XP_011242503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,742 (-)NCBI
GRCm381272,880,193 - 72,917,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244202   ⟹   XP_011242504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,642 (-)NCBI
GRCm381272,880,193 - 72,917,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244203   ⟹   XP_011242505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,654 (-)NCBI
GRCm381272,880,193 - 72,917,880 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244205   ⟹   XP_011242507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,963,622 (-)NCBI
GRCm381272,880,193 - 72,916,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244206   ⟹   XP_011242508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,962,219 (-)NCBI
GRCm381272,880,193 - 72,915,445 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315237   ⟹   XP_017170726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315238   ⟹   XP_017170727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315239   ⟹   XP_017170728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780500
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780501
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780502
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780504
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,926,967 - 72,964,675 (-)NCBI
GRCm381272,880,193 - 72,917,901 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937553
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391272,927,879 - 72,964,675 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083720   ⟸   NM_029444
- UniProtKB: Q9D5F5 (UniProtKB/Swiss-Prot),   Q9D5Y9 (UniProtKB/Swiss-Prot),   Q9CTN5 (UniProtKB/Swiss-Prot),   B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242503   ⟸   XM_011244201
- Peptide Label: isoform X1
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242502   ⟸   XM_011244200
- Peptide Label: isoform X1
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242504   ⟸   XM_011244202
- Peptide Label: isoform X1
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242505   ⟸   XM_011244203
- Peptide Label: isoform X1
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242507   ⟸   XM_011244205
- Peptide Label: isoform X5
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242508   ⟸   XM_011244206
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017170726   ⟸   XM_017315237
- Peptide Label: isoform X2
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170728   ⟸   XM_017315239
- Peptide Label: isoform X4
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170727   ⟸   XM_017315238
- Peptide Label: isoform X3
- UniProtKB: B2RQE0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000120109   ⟸   ENSMUST00000130635
Ensembl Acc Id: ENSMUSP00000106115   ⟸   ENSMUST00000110489
Ensembl Acc Id: ENSMUSP00000116391   ⟸   ENSMUST00000143960
Ensembl Acc Id: ENSMUSP00000118104   ⟸   ENSMUST00000132067
Ensembl Acc Id: ENSMUSP00000119777   ⟸   ENSMUST00000131033
Ensembl Acc Id: ENSMUSP00000035376   ⟸   ENSMUST00000044000
Ensembl Acc Id: ENSMUSP00000121857   ⟸   ENSMUST00000136075

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CTN5-F1-model_v2 AlphaFold Q9CTN5 1-574 view protein structure

Promoters
RGD ID:8678500
Promoter ID:EPDNEW_M17281
Type:initiation region
Name:4930447C04Rik_2
Description:Mus musculus RIKEN cDNA 4930447C04 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17283  EPDNEW_M17284  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381272,917,885 - 72,917,945EPDNEW
RGD ID:6823442
Promoter ID:MM_KWN:11901
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000110489,   OTTMUST00000081169,   OTTMUST00000081170
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361274,018,491 - 74,018,991 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923051 AgrOrtholog
Ensembl Genes ENSMUSG00000021098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044000 ENTREZGENE
  ENSMUST00000044000.12 UniProtKB/Swiss-Prot
  ENSMUST00000130635.8 UniProtKB/TrEMBL
  ENSMUST00000131033.8 UniProtKB/Swiss-Prot
  ENSMUST00000132067.2 UniProtKB/TrEMBL
  ENSMUST00000136075.8 UniProtKB/TrEMBL
  ENSMUST00000143960.8 UniProtKB/TrEMBL
InterPro SIX6OS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75801 UniProtKB/Swiss-Prot
MGD MGI:1923051 ENTREZGENE
NCBI Gene 75801 ENTREZGENE
PANTHER PROTEIN SIX6OS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR35449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam S6OS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 4930447C04Rik PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt B2RQE0 ENTREZGENE, UniProtKB/TrEMBL
  D3YUI5_MOUSE UniProtKB/TrEMBL
  D3YZ78_MOUSE UniProtKB/TrEMBL
  D3Z202_MOUSE UniProtKB/TrEMBL
  F7BAS9_MOUSE UniProtKB/TrEMBL
  Q9CTN5 ENTREZGENE
  Q9D5F5 ENTREZGENE
  Q9D5Y9 ENTREZGENE
  S6OS1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D5F5 UniProtKB/Swiss-Prot
  Q9D5Y9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 4930447C04Rik  RIKEN cDNA 4930447C04 gene  Six6os1  Six6 opposite strand transcript 1  Symbol and/or name change 5135510 APPROVED