Fam178b (family with sequence similarity 178, member B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fam178b (family with sequence similarity 178, member B) Mus musculus
Analyze
Symbol: Fam178b
Name: family with sequence similarity 178, member B
RGD ID: 1620437
MGI Page MGI
Description: Orthologous to human FAM178B (family with sequence similarity 178 member B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700024G10Rik; Gm990; hypothetical protein LOC381337; MGC141033; MGC60970; RIKEN cDNA 1700024G10 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,601,779 - 36,722,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,601,773 - 36,722,264 (-)EnsemblGRCm39 Ensembl
GRCm38136,562,696 - 36,683,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,562,692 - 36,683,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,619,541 - 36,740,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,544,509 - 36,627,632 (-)NCBIMGSCv36mm8
Celera136,349,503 - 36,469,689 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam178bMouseintellectual disability  ISORGD:16056798554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Fam178bMouseschizophrenia  ISORGD:16056798554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106|PMID:30208311

1 to 20 of 35 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam178bMouse1,2-dichloroethane increases expressionEXP 6480464ethylene dichloride results in increased expression of FAM178B mRNACTDPMID:28960355
Fam178bMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of FAM178B mRNACTDPMID:24680724
Fam178bMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15645916480464Tetrachlorodibenzodioxin results in decreased expression of FAM178B mRNACTDPMID:34747641
Fam178bMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:15645916480464Tetrachlorodibenzodioxin results in increased expression of FAM178B mRNACTDPMID:32109520
Fam178bMouse2-palmitoylglycerol increases expressionISORGD:160567964804642-palmitoylglycerol results in increased expression of FAM178B mRNACTDPMID:37199045
Fam178bMouse4-hydroxyphenyl retinamide decreases expressionEXP 6480464Fenretinide results in decreased expression of FAM178B mRNACTDPMID:28973697
Fam178bMouseacrylamide decreases expressionISORGD:15645916480464Acrylamide results in decreased expression of FAM178B mRNACTDPMID:28959563
Fam178bMouseaflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of FAM178B mRNACTDPMID:19770486
Fam178bMouseAflatoxin B2 alpha increases methylationISORGD:16056796480464aflatoxin B2 results in increased methylation of FAM178B intron; aflatoxin B2 results in increased methylation more ...CTDPMID:30157460
Fam178bMousealdehydo-D-glucose multiple interactionsEXP 6480464[lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ...CTDPMID:37567420
Fam178bMousearsane affects methylationISORGD:16056796480464Arsenic affects the methylation of FAM178B geneCTDPMID:25304211
Fam178bMousearsenic atom affects methylationISORGD:16056796480464Arsenic affects the methylation of FAM178B geneCTDPMID:25304211
Fam178bMousebenzo[a]pyrene affects methylationISORGD:16056796480464Benzo(a)pyrene affects the methylation of FAM178B 5' UTR; Benzo(a)pyrene affects the methylation of FAM178B exon; more ...CTDPMID:27901495|PMID:30157460
Fam178bMousebenzo[e]pyrene increases methylationISORGD:16056796480464benzo(e)pyrene results in increased methylation of FAM178B intronCTDPMID:30157460
Fam178bMousebisphenol A increases methylationISORGD:15645916480464bisphenol A results in increased methylation of FAM178B geneCTDPMID:28505145
Fam178bMousebisphenol A multiple interactionsISORGD:16056796480464[bisphenol A co-treated with Fulvestrant] results in increased methylation of FAM178B geneCTDPMID:31601247
Fam178bMousecarbon nanotube decreases expressionEXP 6480464Nanotubes, Carbon analog results in decreased expression of FAM178B mRNA; Nanotubes, Carbon results in decreased more ...CTDPMID:25554681
Fam178bMousecopper atom increases expressionISORGD:15645916480464Copper deficiency results in increased expression of FAM178B mRNACTDPMID:26033743
Fam178bMousecopper(0) increases expressionISORGD:15645916480464Copper deficiency results in increased expression of FAM178B mRNACTDPMID:26033743
Fam178bMouseD-glucose multiple interactionsEXP 6480464[lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ...CTDPMID:37567420

1 to 20 of 35 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam178bMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam178bMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam178bMousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750  



Fam178b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,601,779 - 36,722,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,601,773 - 36,722,264 (-)EnsemblGRCm39 Ensembl
GRCm38136,562,696 - 36,683,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,562,692 - 36,683,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,619,541 - 36,740,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,544,509 - 36,627,632 (-)NCBIMGSCv36mm8
Celera136,349,503 - 36,469,689 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.33NCBI
FAM178B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,875,885 - 96,986,580 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,875,882 - 96,986,580 (-)EnsemblGRCh38hg38GRCh38
GRCh37297,541,622 - 97,652,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,905,349 - 96,927,558 (-)NCBINCBI36Build 36hg18NCBI36
Celera291,981,818 - 92,094,500 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef291,501,493 - 91,612,092 (-)NCBIHuRef
CHM1_1297,546,555 - 97,657,247 (-)NCBICHM1_1
T2T-CHM13v2.0297,382,518 - 97,493,200 (-)NCBIT2T-CHM13v2.0
Fam178b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,301,734 - 46,409,571 (-)NCBIGRCr8
mRatBN7.2938,805,864 - 38,913,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,805,864 - 38,913,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,346,421 - 47,416,791 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,461,406 - 52,532,467 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,743,307 - 50,814,364 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0943,143,606 - 43,251,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,179,795 - 43,251,400 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,143,868 - 43,166,640 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,797,512 - 42,903,922 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,544,331 - 35,617,171 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera936,609,061 - 36,680,051 (-)NCBICelera
Celera936,572,228 - 36,597,258 (-)NCBICelera
Cytogenetic Map9q21NCBI
Fam178b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,227,693 - 4,300,875 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,227,356 - 4,303,063 (-)NCBIChiLan1.0ChiLan1.0
FAM178B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,334,840 - 31,432,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,337,601 - 31,435,589 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,353,048 - 102,439,089 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,796,035 - 97,815,658 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,796,035 - 97,908,202 (-)Ensemblpanpan1.1panPan2
FAM178B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,991,806 - 45,101,977 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,020,892 - 45,101,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,918,820 - 45,028,547 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,867,960 - 45,977,877 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,868,246 - 45,977,833 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,579,723 - 45,689,390 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,865,805 - 45,975,828 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,049,164 - 46,159,214 (+)NCBIUU_Cfam_GSD_1.0
Fam178b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,555,891 - 83,656,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744810,446 - 893,049 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744808,845 - 894,128 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM178B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1356,643,618 - 56,746,393 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2359,259,464 - 59,364,946 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM178B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,204,642 - 1,303,606 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,203,885 - 1,317,560 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,642,717 - 168,680,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam178b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247492,751,514 - 2,828,475 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Fam178b
6086 total Variants

Predicted Target Of
Summary Value
Count of predictions:1020
Count of miRNA genes:366
Interacting mature miRNAs:415
Transcripts:ENSMUST00000027294, ENSMUST00000114981, ENSMUST00000114986, ENSMUST00000128412, ENSMUST00000131336, ENSMUST00000142789, ENSMUST00000170295
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse

1 to 10 of 31 rows





1 to 27 of 27 rows
RefSeq Transcripts NM_001126046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF658771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU605266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY091354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY445320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 27 of 27 rows

Ensembl Acc Id: ENSMUST00000114981   ⟹   ENSMUSP00000124023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,639,057 - 36,722,264 (-)Ensembl
GRCm38.p6 Ensembl136,599,976 - 36,683,183 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170295   ⟹   ENSMUSP00000132846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,773 - 36,722,264 (-)Ensembl
GRCm38.p6 Ensembl136,562,692 - 36,683,183 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,603,948 - 36,626,768 (-)Ensembl
GRCm38.p6 Ensembl136,564,867 - 36,587,687 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,777 - 36,628,398 (-)Ensembl
GRCm38.p6 Ensembl136,562,696 - 36,589,317 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,777 - 36,632,413 (-)Ensembl
GRCm38.p6 Ensembl136,562,696 - 36,593,332 (-)Ensembl
Ensembl Acc Id: ENSMUST00000194025   ⟹   ENSMUSP00000141520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,777 - 36,639,492 (-)Ensembl
GRCm38.p6 Ensembl136,562,696 - 36,600,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000194839   ⟹   ENSMUSP00000141644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,603,409 - 36,640,035 (-)Ensembl
GRCm38.p6 Ensembl136,564,328 - 36,600,954 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,615,537 - 36,639,513 (-)Ensembl
GRCm38.p6 Ensembl136,576,456 - 36,600,432 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249865   ⟹   ENSMUSP00000159961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,779 - 36,722,220 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249866   ⟹   ENSMUSP00000159962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,639,006 - 36,722,217 (-)Ensembl
RefSeq Acc Id: NM_001126046   ⟹   NP_001119518
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,228 (-)NCBI
GRCm38136,562,696 - 36,683,183 (-)NCBI
MGSCv37136,619,541 - 36,740,028 (-)RGD
Celera136,349,503 - 36,469,689 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001372416   ⟹   NP_001359345
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,228 (-)NCBI
GRCm38136,562,698 - 36,683,147 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001372417   ⟹   NP_001359346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,228 (-)NCBI
GRCm38136,562,698 - 36,683,147 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027957   ⟹   NP_082233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,632,413 (-)NCBI
GRCm38136,562,696 - 36,593,332 (-)NCBI
MGSCv37136,619,541 - 36,740,028 (-)RGD
Celera136,349,503 - 36,469,689 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_201365   ⟹   NP_958753
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,638,988 - 36,722,228 (-)NCBI
GRCm38136,599,963 - 36,683,183 (-)NCBI
MGSCv37136,619,541 - 36,740,028 (-)RGD
Celera136,349,503 - 36,469,689 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496116   ⟹   XP_006496179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,266 (-)NCBI
GRCm38136,562,698 - 36,683,185 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496122   ⟹   XP_006496185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,628,420 (-)NCBI
GRCm38136,562,698 - 36,589,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238555   ⟹   XP_011236857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,636,811 (-)NCBI
GRCm38136,562,698 - 36,597,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321439   ⟹   XP_017176928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,252 (-)NCBI
GRCm38136,562,698 - 36,683,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321446   ⟹   XP_017176935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,267 (-)NCBI
GRCm38136,562,698 - 36,683,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321449   ⟹   XP_017176938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,636,768 - 36,722,271 (-)NCBI
GRCm38136,597,687 - 36,683,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321451   ⟹   XP_017176940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,639,503 - 36,722,271 (-)NCBI
GRCm38136,600,422 - 36,683,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321452   ⟹   XP_017176941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,640,016 (-)NCBI
GRCm38136,562,698 - 36,600,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255205   ⟹   XP_030111065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,683,076 (-)NCBI
GRCm38136,562,698 - 36,643,995 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166197   ⟹   XP_036022090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,676,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166198   ⟹   XP_036022091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,676,782 (-)NCBI
Sequence:
1 to 5 of 22 rows
1 to 5 of 22 rows
RefSeq Acc Id: NP_958753   ⟸   NM_201365
- Peptide Label: isoform C
- UniProtKB: E9PUL8 (UniProtKB/TrEMBL),   A0AAQ4VMR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001119518   ⟸   NM_001126046
- Peptide Label: isoform A
- UniProtKB: Q9DA00 (UniProtKB/Swiss-Prot),   Q80VJ7 (UniProtKB/Swiss-Prot),   Q3URT9 (UniProtKB/Swiss-Prot),   Q24JP3 (UniProtKB/Swiss-Prot),   E9PXB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_082233   ⟸   NM_027957
- Peptide Label: isoform B
- UniProtKB: Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496179   ⟸   XM_006496116
- Peptide Label: isoform X2
- UniProtKB: Q9DA00 (UniProtKB/Swiss-Prot),   Q80VJ7 (UniProtKB/Swiss-Prot),   Q3URT9 (UniProtKB/Swiss-Prot),   Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496185   ⟸   XM_006496122
- Peptide Label: isoform X9
- UniProtKB: Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q24JP3-F1-model_v2 AlphaFold Q24JP3 1-464 view protein structure

RGD ID:6873450
Promoter ID:EPDNEW_M176
Type:initiation region
Name:Fam178b_2
Description:Mus musculus family with sequence similarity 178, member B ,transcript variant C, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M177  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38136,593,237 - 36,593,297EPDNEW
RGD ID:6873452
Promoter ID:EPDNEW_M177
Type:initiation region
Name:Fam178b_1
Description:Mus musculus family with sequence similarity 178, member B ,transcript variant C, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M176  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38136,683,139 - 36,683,199EPDNEW


1 to 28 of 28 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000046337 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000114981 ENTREZGENE
  ENSMUST00000170295 ENTREZGENE
  ENSMUST00000193548 ENTREZGENE
  ENSMUST00000193763 ENTREZGENE
  ENSMUST00000249865 ENTREZGENE
InterPro CANIN_dom UniProtKB/Swiss-Prot
  FAM178 UniProtKB/Swiss-Prot
KEGG Report mmu:381337 UniProtKB/Swiss-Prot
MGD MGI:3026913 ENTREZGENE
NCBI Gene 381337 ENTREZGENE
PANTHER PROTEIN FAM178B UniProtKB/Swiss-Prot
  PTHR16046 UniProtKB/Swiss-Prot
Pfam FAM178 UniProtKB/Swiss-Prot
PhenoGen Fam178b PhenoGen
UniProt A0A0A6YWE8_MOUSE UniProtKB/TrEMBL
  A0A0A6YWQ3_MOUSE UniProtKB/TrEMBL
  A0AAQ4VMR2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAQ4VMR4 ENTREZGENE, UniProtKB/TrEMBL
  E9PUL8 ENTREZGENE, UniProtKB/TrEMBL
  E9PXB2 ENTREZGENE, UniProtKB/TrEMBL
  F178B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3URT9 ENTREZGENE
  Q80VJ7 ENTREZGENE
  Q9DA00 ENTREZGENE
UniProt Secondary Q3URT9 UniProtKB/Swiss-Prot
  Q80VJ7 UniProtKB/Swiss-Prot
  Q9DA00 UniProtKB/Swiss-Prot
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Fam178b  family with sequence similarity 178, member B  1700024G10Rik  RIKEN cDNA 1700024G10 gene  Data merged from RGD:1332176 737654 PROVISIONAL