Fam178b (family with sequence similarity 178, member B) - Rat Genome Database

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Gene: Fam178b (family with sequence similarity 178, member B) Mus musculus
Analyze
Symbol: Fam178b
Name: family with sequence similarity 178, member B
RGD ID: 1620437
MGI Page MGI
Description: Orthologous to human FAM178B (family with sequence similarity 178 member B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700024G10Rik; Gm990; hypothetical protein LOC381337; MGC141033; MGC60970; RIKEN cDNA 1700024G10 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,601,779 - 36,722,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,601,773 - 36,722,264 (-)EnsemblGRCm39 Ensembl
GRCm38136,562,696 - 36,683,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,562,692 - 36,683,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,619,541 - 36,740,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,544,509 - 36,627,632 (-)NCBIMGSCv36mm8
Celera136,349,503 - 36,469,689 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750  


Genomics

Comparative Map Data
Fam178b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,601,779 - 36,722,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,601,773 - 36,722,264 (-)EnsemblGRCm39 Ensembl
GRCm38136,562,696 - 36,683,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,562,692 - 36,683,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,619,541 - 36,740,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,544,509 - 36,627,632 (-)NCBIMGSCv36mm8
Celera136,349,503 - 36,469,689 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.33NCBI
FAM178B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,875,885 - 96,986,580 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,875,882 - 96,986,580 (-)EnsemblGRCh38hg38GRCh38
GRCh37297,541,622 - 97,652,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,905,349 - 96,927,558 (-)NCBINCBI36Build 36hg18NCBI36
Celera291,981,818 - 92,094,500 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef291,501,493 - 91,612,092 (-)NCBIHuRef
CHM1_1297,546,555 - 97,657,247 (-)NCBICHM1_1
T2T-CHM13v2.0297,382,518 - 97,493,200 (-)NCBIT2T-CHM13v2.0
Fam178b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,301,734 - 46,409,571 (-)NCBIGRCr8
mRatBN7.2938,805,864 - 38,913,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,805,864 - 38,913,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,346,421 - 47,416,791 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,461,406 - 52,532,467 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,743,307 - 50,814,364 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0943,143,606 - 43,251,440 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,179,795 - 43,251,400 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,143,868 - 43,166,640 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,797,512 - 42,903,922 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,544,331 - 35,617,171 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera936,609,061 - 36,680,051 (-)NCBICelera
Celera936,572,228 - 36,597,258 (-)NCBICelera
Cytogenetic Map9q21NCBI
Fam178b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,227,693 - 4,300,875 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,227,356 - 4,303,063 (-)NCBIChiLan1.0ChiLan1.0
FAM178B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,334,840 - 31,432,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,337,601 - 31,435,589 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,353,048 - 102,439,089 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,796,035 - 97,815,658 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,796,035 - 97,908,202 (-)Ensemblpanpan1.1panPan2
FAM178B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,991,806 - 45,101,977 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,020,892 - 45,101,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,918,820 - 45,028,547 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,867,960 - 45,977,877 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,868,246 - 45,977,833 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,579,723 - 45,689,390 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,865,805 - 45,975,828 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,049,164 - 46,159,214 (+)NCBIUU_Cfam_GSD_1.0
Fam178b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,555,891 - 83,656,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744810,446 - 893,049 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744808,845 - 894,128 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM178B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1356,643,618 - 56,746,393 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2359,259,464 - 59,364,946 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM178B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,204,642 - 1,303,606 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,203,885 - 1,317,560 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,642,717 - 168,680,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam178b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247492,751,514 - 2,828,475 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam178b
6086 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1020
Count of miRNA genes:366
Interacting mature miRNAs:415
Transcripts:ENSMUST00000027294, ENSMUST00000114981, ENSMUST00000114986, ENSMUST00000128412, ENSMUST00000131336, ENSMUST00000142789, ENSMUST00000170295
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001126046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF658771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU605266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY091354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY445320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000114981   ⟹   ENSMUSP00000124023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,639,057 - 36,722,264 (-)Ensembl
GRCm38.p6 Ensembl136,599,976 - 36,683,183 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170295   ⟹   ENSMUSP00000132846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,773 - 36,722,264 (-)Ensembl
GRCm38.p6 Ensembl136,562,692 - 36,683,183 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,603,948 - 36,626,768 (-)Ensembl
GRCm38.p6 Ensembl136,564,867 - 36,587,687 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,777 - 36,628,398 (-)Ensembl
GRCm38.p6 Ensembl136,562,696 - 36,589,317 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,777 - 36,632,413 (-)Ensembl
GRCm38.p6 Ensembl136,562,696 - 36,593,332 (-)Ensembl
Ensembl Acc Id: ENSMUST00000194025   ⟹   ENSMUSP00000141520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,777 - 36,639,492 (-)Ensembl
GRCm38.p6 Ensembl136,562,696 - 36,600,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000194839   ⟹   ENSMUSP00000141644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,603,409 - 36,640,035 (-)Ensembl
GRCm38.p6 Ensembl136,564,328 - 36,600,954 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,615,537 - 36,639,513 (-)Ensembl
GRCm38.p6 Ensembl136,576,456 - 36,600,432 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249865   ⟹   ENSMUSP00000159961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,601,779 - 36,722,220 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249866   ⟹   ENSMUSP00000159962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,639,006 - 36,722,217 (-)Ensembl
RefSeq Acc Id: NM_001126046   ⟹   NP_001119518
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,228 (-)NCBI
GRCm38136,562,696 - 36,683,183 (-)NCBI
MGSCv37136,619,541 - 36,740,028 (-)RGD
Celera136,349,503 - 36,469,689 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001372416   ⟹   NP_001359345
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,228 (-)NCBI
GRCm38136,562,698 - 36,683,147 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001372417   ⟹   NP_001359346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,228 (-)NCBI
GRCm38136,562,698 - 36,683,147 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027957   ⟹   NP_082233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,632,413 (-)NCBI
GRCm38136,562,696 - 36,593,332 (-)NCBI
MGSCv37136,619,541 - 36,740,028 (-)RGD
Celera136,349,503 - 36,469,689 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_201365   ⟹   NP_958753
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,638,988 - 36,722,228 (-)NCBI
GRCm38136,599,963 - 36,683,183 (-)NCBI
MGSCv37136,619,541 - 36,740,028 (-)RGD
Celera136,349,503 - 36,469,689 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496116   ⟹   XP_006496179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,266 (-)NCBI
GRCm38136,562,698 - 36,683,185 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496122   ⟹   XP_006496185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,628,420 (-)NCBI
GRCm38136,562,698 - 36,589,338 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238555   ⟹   XP_011236857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,636,811 (-)NCBI
GRCm38136,562,698 - 36,597,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321439   ⟹   XP_017176928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,252 (-)NCBI
GRCm38136,562,698 - 36,683,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321446   ⟹   XP_017176935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,722,267 (-)NCBI
GRCm38136,562,698 - 36,683,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321449   ⟹   XP_017176938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,636,768 - 36,722,271 (-)NCBI
GRCm38136,597,687 - 36,683,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321451   ⟹   XP_017176940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,639,503 - 36,722,271 (-)NCBI
GRCm38136,600,422 - 36,683,190 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321452   ⟹   XP_017176941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,640,016 (-)NCBI
GRCm38136,562,698 - 36,600,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255205   ⟹   XP_030111065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,683,076 (-)NCBI
GRCm38136,562,698 - 36,643,995 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166197   ⟹   XP_036022090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,676,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166198   ⟹   XP_036022091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,601,779 - 36,676,782 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001119518 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359345 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359346 (Get FASTA)   NCBI Sequence Viewer  
  NP_082233 (Get FASTA)   NCBI Sequence Viewer  
  NP_958753 (Get FASTA)   NCBI Sequence Viewer  
  XP_006496179 (Get FASTA)   NCBI Sequence Viewer  
  XP_006496185 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176928 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176935 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176938 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176940 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176941 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111065 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022090 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022091 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH50210 (Get FASTA)   NCBI Sequence Viewer  
  AAI14577 (Get FASTA)   NCBI Sequence Viewer  
  BAB24515 (Get FASTA)   NCBI Sequence Viewer  
  BAE24598 (Get FASTA)   NCBI Sequence Viewer  
  EDL14497 (Get FASTA)   NCBI Sequence Viewer  
  EDL14498 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000124023
  ENSMUSP00000124023.2
  ENSMUSP00000132846
  ENSMUSP00000132846.2
  ENSMUSP00000141520.2
  ENSMUSP00000141644.2
  ENSMUSP00000159961
  ENSMUSP00000159961.1
  ENSMUSP00000159962.1
GenBank Protein Q24JP3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_958753   ⟸   NM_201365
- Peptide Label: isoform C
- UniProtKB: E9PUL8 (UniProtKB/TrEMBL),   A0AAQ4VMR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001119518   ⟸   NM_001126046
- Peptide Label: isoform A
- UniProtKB: Q9DA00 (UniProtKB/Swiss-Prot),   Q80VJ7 (UniProtKB/Swiss-Prot),   Q3URT9 (UniProtKB/Swiss-Prot),   Q24JP3 (UniProtKB/Swiss-Prot),   E9PXB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_082233   ⟸   NM_027957
- Peptide Label: isoform B
- UniProtKB: Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496179   ⟸   XM_006496116
- Peptide Label: isoform X2
- UniProtKB: Q9DA00 (UniProtKB/Swiss-Prot),   Q80VJ7 (UniProtKB/Swiss-Prot),   Q3URT9 (UniProtKB/Swiss-Prot),   Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496185   ⟸   XM_006496122
- Peptide Label: isoform X9
- UniProtKB: Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011236857   ⟸   XM_011238555
- Peptide Label: isoform X9
- UniProtKB: Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017176935   ⟸   XM_017321446
- Peptide Label: isoform X3
- UniProtKB: Q9DA00 (UniProtKB/Swiss-Prot),   Q80VJ7 (UniProtKB/Swiss-Prot),   Q3URT9 (UniProtKB/Swiss-Prot),   Q24JP3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017176928   ⟸   XM_017321439
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017176941   ⟸   XM_017321452
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017176938   ⟸   XM_017321449
- Peptide Label: isoform X4
- UniProtKB: A0AAQ4VMR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176940   ⟸   XM_017321451
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030111065   ⟸   XM_030255205
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001359346   ⟸   NM_001372417
- Peptide Label: isoform E
- UniProtKB: Q9DA00 (UniProtKB/Swiss-Prot),   Q80VJ7 (UniProtKB/Swiss-Prot),   Q3URT9 (UniProtKB/Swiss-Prot),   Q24JP3 (UniProtKB/Swiss-Prot),   A0AAQ4VMR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001359345   ⟸   NM_001372416
- Peptide Label: isoform D
Ensembl Acc Id: ENSMUSP00000132846   ⟸   ENSMUST00000170295
Ensembl Acc Id: ENSMUSP00000141520   ⟸   ENSMUST00000194025
Ensembl Acc Id: ENSMUSP00000124023   ⟸   ENSMUST00000114981
Ensembl Acc Id: ENSMUSP00000141644   ⟸   ENSMUST00000194839
RefSeq Acc Id: XP_036022090   ⟸   XM_036166197
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036022091   ⟸   XM_036166198
- Peptide Label: isoform X7
Ensembl Acc Id: ENSMUSP00000159961   ⟸   ENSMUST00000249865
Ensembl Acc Id: ENSMUSP00000159962   ⟸   ENSMUST00000249866
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q24JP3-F1-model_v2 AlphaFold Q24JP3 1-464 view protein structure

Promoters
RGD ID:6873450
Promoter ID:EPDNEW_M176
Type:initiation region
Name:Fam178b_2
Description:Mus musculus family with sequence similarity 178, member B ,transcript variant C, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M177  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38136,593,237 - 36,593,297EPDNEW
RGD ID:6873452
Promoter ID:EPDNEW_M177
Type:initiation region
Name:Fam178b_1
Description:Mus musculus family with sequence similarity 178, member B ,transcript variant C, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M176  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38136,683,139 - 36,683,199EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3026913 AgrOrtholog
Ensembl Genes ENSMUSG00000046337 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000114981 ENTREZGENE
  ENSMUST00000114981.3 UniProtKB/TrEMBL
  ENSMUST00000170295 ENTREZGENE
  ENSMUST00000170295.8 UniProtKB/TrEMBL
  ENSMUST00000193548 ENTREZGENE
  ENSMUST00000193763 ENTREZGENE
  ENSMUST00000194025.2 UniProtKB/TrEMBL
  ENSMUST00000194839.6 UniProtKB/TrEMBL
  ENSMUST00000249865 ENTREZGENE
  ENSMUST00000249865.1 UniProtKB/TrEMBL
  ENSMUST00000249866.1 UniProtKB/TrEMBL
InterPro CANIN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAM178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:381337 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:3026913 ENTREZGENE
NCBI Gene 381337 ENTREZGENE
PANTHER PROTEIN FAM178B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16046 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam178b PhenoGen
UniProt A0A0A6YWE8_MOUSE UniProtKB/TrEMBL
  A0A0A6YWQ3_MOUSE UniProtKB/TrEMBL
  A0AAQ4VMR2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAQ4VMR4 ENTREZGENE, UniProtKB/TrEMBL
  E9PUL8 ENTREZGENE, UniProtKB/TrEMBL
  E9PXB2 ENTREZGENE, UniProtKB/TrEMBL
  F178B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3URT9 ENTREZGENE
  Q80VJ7 ENTREZGENE
  Q9DA00 ENTREZGENE
UniProt Secondary Q3URT9 UniProtKB/Swiss-Prot
  Q80VJ7 UniProtKB/Swiss-Prot
  Q9DA00 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Fam178b  family with sequence similarity 178, member B  1700024G10Rik  RIKEN cDNA 1700024G10 gene  Data merged from RGD:1332176 737654 PROVISIONAL