Advanced Search (OLGA)

Gene: Dmrtc1a (DMRT-like family C1a) Mus musculus

Subscribe to Updates

Analyze

Symbol:

Dmrtc1a

Name:

DMRT-like family C1a

RGD ID:

1619135

MGI Page

MGI

Description:

Predicted to be active in nucleus. Is expressed in several structures, including genitourinary system; gut; liver; lung; and spinal cord. Orthologous to several human genes including DMRTC1 (DMRT like family C1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1700030H14Rik; 4921520P21Rik; Dmrt8.; Dmrt8.1; DMRTC1; doublesex and mab-3 related transcription factor 8.1; doublesex- and mab-3-related transcription factor 8.1; doublesex- and mab-3-related transcription factor C1; likely ortologue to human doublesex-and mab-3-related transcription factor C1 (Dmrtc1); RP23-76A20.9

RGD Orthologs

Human

Rat

Bonobo

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DMRTC1 (DMRT like family C1)	RGD	RGD
Rattus norvegicus (Norway rat):	Dmrtc1a (DMRT-like family C1a)	RGD	RGD
Pan paniscus (bonobo/pygmy chimpanzee):	DMRTC1 (DMRT like family C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DMRTC1B (DMRT like family C1B)	HGNC	OMA, OrthoDB, OrthoMCL, Treefam
Alliance orthologs ³
Homo sapiens (human):	DMRTC1 (DMRT like family C1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	DMRTC1B (DMRT like family C1B)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Rattus norvegicus (Norway rat):	Dmrtc1a (DMRT-like family C1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	dmd-7	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	dmd-9	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	101,946,822 - 101,953,753 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	101,946,822 - 101,952,293 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	102,903,216 - 102,910,145 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	102,903,216 - 102,908,687 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	100,098,560 - 100,104,026 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	99,105,941 - 99,111,406 (-)	NCBI		MGSCv36	mm8
Celera	X	89,802,496 - 89,807,958 (-)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	45.79	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrtc1a	Mouse	autistic disorder		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
Dmrtc1a	Mouse	autosomal hemophilia A		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA A	ClinVar	PMID:31690835
Dmrtc1a	Mouse	Cornelia de Lange syndrome 5		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cornelia de Lange syndrome 5	ClinVar	PMID:24403048
Dmrtc1a	Mouse	factor VIII deficiency		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Factor 8 deficiency and congenital	ClinVar	PMID:31690835
Dmrtc1a	Mouse	intestinal volvulus		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIAL	ClinVar	PMID:25741868
Dmrtc1a	Mouse	syndromic X-linked intellectual disability Lubs type		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs type	ClinVar	PMID:25741868
Dmrtc1a	Mouse	Volvulus Of Midgut		ISO	DMRTC1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Volvulus of midgut	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrtc1a	Mouse	1,2-dichloroethane	decreases expression	EXP		6480464	ethylene dichloride results in decreased expression of DMRTC1A mRNA	CTD	PMID:28960355
Dmrtc1a	Mouse	2-methoxyethanol	increases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	methyl cellosolve results in increased expression of DMRTC1A mRNA	CTD	PMID:21061450
Dmrtc1a	Mouse	6-propyl-2-thiouracil	decreases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	Propylthiouracil results in decreased expression of DMRTC1A mRNA	CTD	PMID:30047161
Dmrtc1a	Mouse	aflatoxin B1	decreases methylation	ISO	DMRTC1 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of DMRTC1 gene	CTD	PMID:27153756
Dmrtc1a	Mouse	all-trans-retinoic acid	increases expression	ISO	DMRTC1 (Homo sapiens)	6480464	Tretinoin results in increased expression of DMRTC1 mRNA	CTD	PMID:23724009
Dmrtc1a	Mouse	amitrole	decreases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	Amitrole results in decreased expression of DMRTC1A mRNA	CTD	PMID:30047161
Dmrtc1a	Mouse	atrazine	increases expression	ISO	DMRTC1 (Homo sapiens)	6480464	Atrazine results in increased expression of DMRTC1 mRNA	CTD	PMID:22378314
Dmrtc1a	Mouse	bisphenol A	increases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	bisphenol A results in increased expression of DMRTC1A mRNA	CTD	PMID:30816183 more ...
Dmrtc1a	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of DMRTC1A mRNA	CTD	PMID:32156529
Dmrtc1a	Mouse	ketamine	increases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	Ketamine results in increased expression of DMRTC1A mRNA	CTD	PMID:20080153
Dmrtc1a	Mouse	methimazole	decreases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	Methimazole results in decreased expression of DMRTC1A mRNA	CTD	PMID:30047161
Dmrtc1a	Mouse	phenobarbital	decreases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	Phenobarbital results in decreased expression of DMRTC1A mRNA	CTD	PMID:30047161
Dmrtc1a	Mouse	resveratrol	multiple interactions	ISO	DMRTC1 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of DMRTC1 mRNA	CTD	PMID:23557933
Dmrtc1a	Mouse	silicon dioxide	decreases expression	ISO	DMRTC1 (Homo sapiens)	6480464	Silicon Dioxide analog results in decreased expression of DMRTC1 mRNA	CTD	PMID:25895662
Dmrtc1a	Mouse	sulfadimethoxine	decreases expression	ISO	Dmrtc1a (Rattus norvegicus)	6480464	Sulfadimethoxine results in decreased expression of DMRTC1A mRNA	CTD	PMID:30047161
Dmrtc1a	Mouse	valproic acid	increases methylation	ISO	DMRTC1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of DMRTC1 gene	CTD	PMID:29154799

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrtc1a	Mouse	nucleus	is_active_in	IBA	PANTHER:PTN000960547 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Dmrtc1a	Mouse	DNA-binding transcription factor activity, RNA polymerase II-specific	NOT\|enables	IBA	PANTHER:PTN000268760 and PANTHER:PTN000960547	2290270		GO_Central	GO_REF:0000033
Dmrtc1a	Mouse	RNA polymerase II cis-regulatory region sequence-specific DNA binding	NOT\|enables	IBA	PANTHER:PTN000268760 and PANTHER:PTN000960547	2290270		GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14681479	PMID:16141072	PMID:16141073	PMID:16488114	PMID:21267068	PMID:21677750
PMID:21873635	PMID:38355793

Dmrtc1a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	101,946,822 - 101,953,753 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	101,946,822 - 101,952,293 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	102,903,216 - 102,910,145 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	102,903,216 - 102,908,687 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	100,098,560 - 100,104,026 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	99,105,941 - 99,111,406 (-)	NCBI		MGSCv36	mm8
Celera	X	89,802,496 - 89,807,958 (-)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	45.79	NCBI

DMRTC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	72,872,025 - 72,943,837 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	72,872,025 - 72,943,837 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	72,091,859 - 72,163,676 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	72,008,584 - 72,012,347 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	71,874,883 - 71,880,719	NCBI
Celera	X	72,408,584 - 72,412,347 (+)	NCBI		Celera
Cytogenetic Map	X	q13.1	NCBI
HuRef	X	65,819,845 - 65,823,542 (+)	NCBI		HuRef
CHM1_1	X	71,984,326 - 71,988,139 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	71,305,532 - 71,377,347 (-)	NCBI		T2T-CHM13v2.0

Dmrtc1a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	71,861,910 - 71,892,508 (+)	NCBI		GRCr8
mRatBN7.2	X	67,822,187 - 67,852,572 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	67,822,113 - 67,852,571 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	69,330,594 - 69,335,906 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	72,830,834 - 72,836,146 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	70,391,974 - 70,397,286 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	72,624,660 - 72,654,258 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	X	69,159,060 - 69,198,968 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

DMRTC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	72,544,301 - 72,615,644 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	72,547,909 - 72,619,252 (-)	NCBI		NHGRI_mPanPan1

Variants in Dmrtc1a
205 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	874
Count of miRNA genes:	315
Interacting mature miRNAs:	352
Transcripts:	ENSMUST00000033686, ENSMUST00000119624, ENSMUST00000120808, ENSMUST00000121197
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4141630	Gct6_m	granulosa cell tumorigenesis 6 (mouse)			Not determined			47179121	129764756	Mouse
13208552	Wght12_m	weight 12 (mouse)					X	94043606	149782996	Mouse
4141803	Lmr30_m	leishmaniasis resistance 30 (mouse)			Not determined			85062606	119062720	Mouse
1302054	Gct4_m	granulosa cell tumorigenesis 4 (mouse)			Not determined		X	76124336	102062720	Mouse
13208556	Lgth14_m	body length 14 (mouse)					X	94043606	149782996	Mouse
13824980	Ferq1_m	genetic fertility QTL 1 (mouse)					X	54045360	148782996	Mouse
11075102	Modc2_m	modifier of Odc2 (mouse)					X	80189914	114190059	Mouse
1357500	Mdmsc6_m	modifier of muscularity 6 (mouse)			Not determined		X	75306671	109306758	Mouse
12879918	Shm4_m	sperm head morphology 4 (mouse)					X	72072050	102062720	Mouse
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
4141665	Mhysq2_m	male hybrid sterility QTL 2 (mouse)			Not determined			71453852	139203212	Mouse

AI013752

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	102,903,329 - 102,903,507	UniSTS	GRCm38
MGSCv37	X	100,098,668 - 100,098,846	UniSTS	GRCm37
Celera	X	89,802,604 - 89,802,782	UniSTS
Cytogenetic Map	X	D	UniSTS

Dmrtc1a

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	X	100,101,353 - 100,102,147	UniSTS	GRCm37
Celera	X	89,805,285 - 89,806,079	UniSTS
cM Map	X		UniSTS

Dmrtc1a

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	D	UniSTS

Dmrtc1a

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	X	102,906,014 - 102,906,808	UniSTS	GRCm38
MGSCv37	X	100,101,353 - 100,102,147	UniSTS	GRCm37
Celera	X	89,805,285 - 89,806,079	UniSTS
Cytogenetic Map	X	D	UniSTS
cM Map	X		UniSTS

Dmrtc1a

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	D	UniSTS

Dmrtc1a

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	X	D	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001038616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_027591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_029378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006528280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017318619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK006548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK014934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL773565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL824711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB310814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC147175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC147176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ316772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ316773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ316774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000033686 ⟹ ENSMUSP00000033686

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	101,946,828 - 101,952,293 (-)	Ensembl
GRCm38.p6 Ensembl	X	102,903,222 - 102,908,687 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000119624 ⟹ ENSMUSP00000112458

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	101,946,822 - 101,952,278 (-)	Ensembl
GRCm38.p6 Ensembl	X	102,903,216 - 102,908,672 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000120808 ⟹ ENSMUSP00000112572

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	101,946,828 - 101,950,075 (-)	Ensembl
GRCm38.p6 Ensembl	X	102,903,222 - 102,906,469 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000121197 ⟹ ENSMUSP00000113569

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	X	101,946,828 - 101,950,164 (-)	Ensembl
GRCm38.p6 Ensembl	X	102,903,222 - 102,906,558 (-)	Ensembl

RefSeq Acc Id:

NM_001038616 ⟹ NP_001033705

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	101,946,827 - 101,950,163 (-)	NCBI
GRCm38	X	102,903,221 - 102,906,557 (-)	NCBI
MGSCv37	X	100,098,560 - 100,104,026 (-)	RGD
Celera	X	89,802,496 - 89,807,958 (-)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

GAGAAATGGTTTGCCAAGCATCAGGGAGCTGAAAAGATCAATAATGATTTGAGAACTCAGTATGGGTGTGGGATATTTTTGAAAAGGGATGGTGGAGGAGGAAGTAGCAAAAAAATATGACTCTTCTT
TTACAGCTGGAAAGAACACTGTGCAGCAGATCCAGGCCCAGGTTGACACAGCAACCCAGGAGGAGAGCTCCCAAGGGCCTGTGCTGCTGAACCAGCACCCAGAAACAACATCTGTGCCATATACTCCA
GAGACTGTGGGGCAACAACTGATGGTGTCCCTTCCTGGGGAGCCCCATGGGACCTCTGCCATGCCAAGCATGTGTCCAAGCCTGATTCTTCAGCCCTGTGCCACCACTGACCCTATGCTACTGCAACC
ACAGGTCATGGGCCCCAGTGCCTCCAACCAGGCTTCAGTTTCTGCTACCTTAGAGTGGCAGGAGATGCTGGAGGCTGCTGAAGCTCTGCTGGCTCTGAAAAATTCGTCTCAGACACGTCACCAGCCCT
GTGGCATGCCAGGTACTGCTGGAGAGAGGGGACTGCAGCTGGCCAACCCCTCTATGCCACCAAGGCCTACCAGCTCTGGTTCTCTGCCTTCTGGACATCTGGATTGCATGTCCCTCTTGACTTAAGAA
CCCAGACTATGAGGCCTCACTAGAGCACTGCCTGTTTGATTACTGTTTCTGAACTTGCAAAATGGCTCCTGTCCAAAGTGCTTAATGTGTTTTTTAAGCCTTCAGGTATTTTATAAGCTTTAAGATCC
TTTTTATGATGTAGAGCAATTACTTGGCTTTCCTATGTTCTTTACCCCCATCCGTAATTTCTTTGGAAGCTGGGGCTTTTTATGTGTCTTATAAAATGCTTTGTGCAATCTAATATGATCAAACAATC
TATCAATGGGGTTCTGAGTGGTATCAAATGCCAGTGTTTTCCTTTGTGTGCACTCACTCGCACACATATCTGCACACTACTGTACTTAAAACATGCATGTGGAAACATGAGGATTTTCACATTGCATC
TAGATTTGTGTGTTACCAAAAATAAATAATTTTGTAAGGCATT

hide sequence

RefSeq Acc Id:

NM_027591 ⟹ NP_081867

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	101,946,828 - 101,952,293 (-)	NCBI
GRCm38	X	102,903,222 - 102,908,687 (-)	NCBI
MGSCv37	X	100,098,560 - 100,104,026 (-)	RGD
Celera	X	89,802,496 - 89,807,958 (-)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

ACTCTGGACAGCCCAGCAGCCTGAACACAAGGTCCCCTGGCTGAACTGAAAATGCAGCGGTCTT
CGGGTTCCCGGGAACCTCGTAAGGACTTTTCTCCTGTGACCACCTCCAAGAAGGAGGAGGCTACCCCATTAAAGAGACGCCTGGTTGAGAGACATAAAAGGACTATGGCTGCTGCTCATCCATCACAC
ATGCACGTCAAGAAATTGGCTGTAGAAGAAGGAGTTCGCACTGGAAAGAACACTGTGCAGCAGATCCAGGCCCAGGTTGACACAGCAACCCAGGAGGAGAGCTCCCAAGGGCCTGTGCTGCTGAACCA
GCACCCAGAAACAACATCTGTGCCATATACTCCAGAGACTGTGGGGCAACAACTGATGGTGTCCCTTCCTGGGGAGCCCCATGGGACCTCTGCCATGCCAAGCATGTGTCCAAGCCTGATTCTTCAGC
CCTGTGCCACCACTGACCCTATGCTACTGCAACCACAGGTCATGGGCCCCAGTGCCTCCAACCAGGCTTCAGTTTCTGCTACCTTAGAGTGGCAGGAGATGCTGGAGGCTGCTGAAGCTCTGCTGGCT
CTGAAAAATTCGTCTCAGACACGTCACCAGCCCTGTGGCATGCCAGTGAAGAGAGAGCTAAGCGGAGCATCACGTATGTGATTTGGCTCTGGACTTTGTTGGCTCTGGACTTTGTCTTTCTGTCTCCA
GGTACTGCTGGAGAGAGGGGACTGCAGCTGGCCAACCCCTCTATGCCACCAAGGCCTACCAGCTCTGGTTCTCTGCCTTCTGGACATCTGGATTGCATGTCCCTCTTGACTTAAGAACCCAGACTATG
AGGCCTCACTAGAGCACTGCCTGTTTGATTACTGTTTCTGAACTTGCAAAATGGCTCCTGTCCAAAGTGCTTAATGTGTTTTTTAAGCCTTCAGGTATTTTATAAGCTTTAAGATCCTTTTTATGATG
TAGAGCAATTACTTGGCTTTCCTATGTTCTTTACCCCCATCCGTAATTTCTTTGGAAGCTGGGGCTTTTTATGTGTCTTATAAAATGCTTTGTGCAATCTAATATGATCAAACAATCTATCAATGGGG
TTCTGAGTGGTATCAAATGCCAGTGTTTTCCTTTGTGTGCACTCACTCGCACACATATCTGCACACTACTGTACTTAAAACATGCATGTGGAAACATGAGGATTTTCACATTGCATCTAGATTTGTGT
GTTACCAAAAATAAATAATTTTGTAAGGCAT

hide sequence

RefSeq Acc Id:

NM_029378 ⟹ NP_083654

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	101,946,827 - 101,950,075 (-)	NCBI
GRCm38	X	102,903,221 - 102,906,469 (-)	NCBI
MGSCv37	X	100,098,560 - 100,104,026 (-)	RGD
Celera	X	89,802,496 - 89,807,958 (-)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

ATGGTGGAGGAGGAAGTAGCAAAAAAATATGACTCTTCTTTTACAGCTGGAAAGAACACTGTGC
AGCAGATCCAGGCCCAGGTTGACACAGCAACCCAGGAGGAGAGCTCCCAAGGGCCTGTGCTGCTGAACCAGCACCCAGAAACAACATCTGTGCCATATACTCCAGAGACTGTGGGGCAACAACTGATG
GTGTCCCTTCCTGGGGAGCCCCATGGGACCTCTGCCATGCCAAGCATGTGTCCAAGCCTGATTCTTCAGCCCTGTGCCACCACTGACCCTATGCTACTGCAACCACAGGTCATGGGCCCCAGTGCCTC
CAACCAGGCTTCAGTTTCTGCTACCTTAGAGTGGCAGGAGATGCTGGAGGCTGCTGAAGCTCTGCTGGCTCTGAAAAATTCGTCTCAGACACGTCACCAGCCCTGTGGCATGCCAGTGAAGAGAGAGC
TAAGCGGAGCATCACGTATGTGATTTGGCTCTGGACTTTGTTGGCTCTGGACTTTGTCTTTCTGTCTCCAGGTACTGCTGGAGAGAGGGGACTGCAGCTGGCCAACCCCTCTATGCCACCAAGGCCTA
CCAGCTCTGGTTCTCTGCCTTCTGGACATCTGGATTGCATGTCCCTCTTGACTTAAGAACCCAGACTATGAGGCCTCACTAGAGCACTGCCTGTTTGATTACTGTTTCTGAACTTGCAAAATGGCTCC
TGTCCAAAGTGCTTAATGTGTTTTTTAAGCCTTCAGGTATTTTATAAGCTTTAAGATCCTTTTTATGATGTAGAGCAATTACTTGGCTTTCCTATGTTCTTTACCCCCATCCGTAATTTCTTTGGAAG
CTGGGGCTTTTTATGTGTCTTATAAAATGCTTTGTGCAATCTAATATGATCAAACAATCTATCAATGGGGTTCTGAGTGGTATCAAATGCCAGTGTTTTCCTTTGTGTGCACTCACTCGCACACATAT
CTGCACACTACTGTACTTAAAACATGCATGTGGAAACATGAGGATTTTCACATTGCATCTAGATTTGTGTGTTACCAAAAATAAATAATTTTGTAAGGCATT

hide sequence

RefSeq Acc Id:

XM_006528280 ⟹ XP_006528343

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	101,946,822 - 101,952,337 (-)	NCBI
GRCm38	X	102,903,216 - 102,908,806 (-)	NCBI

Sequence:

show sequence

CGCCCCTCCGAACTGTCTTATTACTGTCTTTGCTGCTCGTCCTCACTCTGGACAGCCCAGCAGCCTGAACACAAGGTCCCCTGGCTGAACTGAAAATGCAGCGGTCTTCGGGTTCCCGGGAACCTCGT
AAGGACTTTTCTCCTGTGACCACCTCCAAGAAGGAGGAGGCTACCCCATTAAAGAGACGCCTGGTTGAGAGACATAAAAGGACTATGGCTGCTGCTCATCCATCACACATGCACGTCAAGAAATTGGC
TGTAGAAGAAGGAGTTCGCACTGGAAAGAACACTGTGCAGCAGATCCAGGCCCAGGTTGACACAGCAACCCAGGAGGAGAGCTCCCAAGGGCCTGTGCTGCTGAACCAGCACCCAGAAACAACATCTG
TGCCATATACTCCAGAGACTGTGGGGCAACAACTGATGGTGTCCCTTCCTGGGGAGCCCCATGGGACCTCTGCCATGCCAAGCATGTGTCCAAGCCTGATTCTTCAGCCCTGTGCCACCACTGACCCT
ATGCTACTGCAACCACAGGTCATGGGCCCCAGTGCCTCCAACCAGGCTTCAGTTTCTGCTACCTTAGAGTGGCAGGAGATGCTGGAGGCTGCTGAAGCTCTGCTGGCTCTGAAAAATTCGTCTCAGAC
ACGTCACCAGCCCTGTGGCATGCCAGGTACTGCTGGAGAGAGGGGACTGCAGCTGGCCAACCCCTCTATGCCACCAAGGCCTACCAGCTCTGGTTCTCTGCCTTCTGGACATCTGGATTGCATGTCCC
TCTTGACTTAAGAACCCAGACTATGAGGCCTCACTAGAGCACTGCCTGTTTGATTACTGTTTCTGAACTTGCAAAATGGCTCCTGTCCAAAGTGCTTAATGTGTTTTTTAAGCCTTCAGGTATTTTAT
AAGCTTTAAGATCCTTTTTATGATGTAGAGCAATTACTTGGCTTTCCTATGTTCTTTACCCCCATCCGTAATTTCTTTGGAAGCTGGGGCTTTTTATGTGTCTTATAAAATGCTTTGTGCAATCTAAT
ATGATCAAACAATCTATCAATGGGGTTCTGAGTGGTATCAAATGCCAGTGTTTTCCTTTGTGTGCACTCACTCGCACACATATCTGCACACTACTGTACTTAAAACATGCATGTGGAAACATGAGGAT
TTTCACATTGCATCTAGATTTGTGTGTTACCAAAAATAAATAATTTTGTAAGGCATTAAAAA

hide sequence

RefSeq Acc Id:

XM_017318619 ⟹ XP_017174108

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	101,946,822 - 101,953,753 (-)	NCBI
GRCm38	X	102,903,216 - 102,910,145 (-)	NCBI

Sequence:

show sequence

GTGTAGCTGGAAACAAGGGAACCTCGTAAGGACTTTTCTCCTGTGACCACCTCCAAGAAGGAGG
AGGCTACCCCATTAAAGAGACGCCTGGTTGAGAGACATAAAAGGACTATGGCTGCTGCTCATCCATCACACATGCACGTCAAGAAATTGGCTGTAGAAGAAGGAGTTCGCACTGGAAAGAACACTGTG
CAGCAGATCCAGGCCCAGGTTGACACAGCAACCCAGGAGGAGAGCTCCCAAGGGCCTGTGCTGCTGAACCAGCACCCAGAAACAACATCTGTGCCATATACTCCAGAGACTGTGGGGCAACAACTGAT
GGTGTCCCTTCCTGGGGAGCCCCATGGGACCTCTGCCATGCCAAGCATGTGTCCAAGCCTGATTCTTCAGCCCTGTGCCACCACTGACCCTATGCTACTGCAACCACAGGTCATGGGCCCCAGTGCCT
CCAACCAGGCTTCAGTTTCTGCTACCTTAGAGTGGCAGGAGATGCTGGAGGCTGCTGAAGCTCTGCTGGCTCTGAAAAATTCGTCTCAGACACGTCACCAGCCCTGTGGCATGCCAGGTACTGCTGGA
GAGAGGGGACTGCAGCTGGCCAACCCCTCTATGCCACCAAGGCCTACCAGCTCTGGTTCTCTGCCTTCTGGACATCTGGATTGCATGTCCCTCTTGACTTAAGAACCCAGACTATGAGGCCTCACTAG
AGCACTGCCTGTTTGATTACTGTTTCTGAACTTGCAAAATGGCTCCTGTCCAAAGTGCTTAATGTGTTTTTTAAGCCTTCAGGTATTTTATAAGCTTTAAGATCCTTTTTATGATGTAGAGCAATTAC
TTGGCTTTCCTATGTTCTTTACCCCCATCCGTAATTTCTTTGGAAGCTGGGGCTTTTTATGTGTCTTATAAAATGCTTTGTGCAATCTAATATGATCAAACAATCTATCAATGGGGTTCTGAGTGGTA
TCAAATGCCAGTGTTTTCCTTTGTGTGCACTCACTCGCACACATATCTGCACACTACTGTACTTAAAACATGCATGTGGAAACATGAGGATTTTCACATTGCATCTAGATTTGTGTGTTACCAAAAAT
AAATAATTTTGTAAGGCATTAAAAA

hide sequence


Protein RefSeqs	NP_001033705	(Get FASTA)	NCBI Sequence Viewer
	NP_081867	(Get FASTA)	NCBI Sequence Viewer
	NP_083654	(Get FASTA)	NCBI Sequence Viewer
	XP_006528343	(Get FASTA)	NCBI Sequence Viewer
	XP_017174108	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI47176	(Get FASTA)	NCBI Sequence Viewer
	AAI47177	(Get FASTA)	NCBI Sequence Viewer
	ABC48232	(Get FASTA)	NCBI Sequence Viewer
	ABC48233	(Get FASTA)	NCBI Sequence Viewer
	ABC48234	(Get FASTA)	NCBI Sequence Viewer
	BAB24647	(Get FASTA)	NCBI Sequence Viewer
	BAB29626	(Get FASTA)	NCBI Sequence Viewer
	EDL14115	(Get FASTA)	NCBI Sequence Viewer
	EDL14116	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000033686
	ENSMUSP00000033686.2
	ENSMUSP00000112458
	ENSMUSP00000112572
	ENSMUSP00000112572.2
	ENSMUSP00000113569
	ENSMUSP00000113569.2
GenBank Protein	Q9D9R7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_081867 ⟸ NM_027591
- Peptide Label:	isoform a
- UniProtKB:	B1AX34 (UniProtKB/TrEMBL), B1AX33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRSSGSREPRKDFSPVTTSKKEEATPLKRRLVERHKRTMAAAHPSHMHVKKLAVEEGVRTGKNTVQQIQAQVDTATQEESSQGPVLLNQHPETTSVPYTPETVGQQLMVSLPGEPHGTSAMPSMCPS LILQPCATTDPMLLQPQVMGPSASNQASVSATLEWQEMLEAAEALLALKNSSQTRHQPCGMPVKRELSGASRM hide sequence

RefSeq Acc Id:	NP_083654 ⟸ NM_029378
- Peptide Label:	isoform b
- UniProtKB:	Q9D9R7 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVEEEVAKKYDSSFTAGKNTVQQIQAQVDTATQEESSQGPVLLNQHPETTSVPYTPETVGQQLMVSLPGEPHGTSAMPSMCPSLILQPCATTDPMLLQPQVMGPSASNQASVSATLEWQEMLEAAEAL LALKNSSQTRHQPCGMPVKRELSGASRM hide sequence

RefSeq Acc Id:	NP_001033705 ⟸ NM_001038616
- Peptide Label:	isoform c
- UniProtKB:	Q2PMY0 (UniProtKB/Swiss-Prot), B1AX32 (UniProtKB/Swiss-Prot), B1AX31 (UniProtKB/Swiss-Prot), Q9D5U3 (UniProtKB/Swiss-Prot), Q9D9R7 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVEEEVAKKYDSSFTAGKNTVQQIQAQVDTATQEESSQGPVLLNQHPETTSVPYTPETVGQQLM VSLPGEPHGTSAMPSMCPSLILQPCATTDPMLLQPQVMGPSASNQASVSATLEWQEMLEAAEALLALKNSSQTRHQPCGMPGTAGERGLQLANPSMPPRPTSSGSLPSGHLDCMSLLT hide sequence

RefSeq Acc Id:	XP_006528343 ⟸ XM_006528280
- Peptide Label:	isoform X1
- UniProtKB:	B1AX33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRSSGSREPRKDFSPVTTSKKEEATPLKRRLVERHKRTMAAAHPSHMHVKKLAVEEGVRTGKNTVQQIQAQVDTATQEESSQGPVLLNQHPETTSVPYTPETVGQQLMVSLPGEPHGTSAMPSMCPS LILQPCATTDPMLLQPQVMGPSASNQASVSATLEWQEMLEAAEALLALKNSSQTRHQPCGMPGTAGERGLQLANPSMPPRPTSSGSLPSGHLDCMSLLT hide sequence

RefSeq Acc Id:	XP_017174108 ⟸ XM_017318619
- Peptide Label:	isoform X2
- UniProtKB:	B1AX33 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAHPSHMHVKKLAVEEGVRTGKNTVQQIQAQVDTATQEESSQGPVLLNQHPETTSVPYTPETVGQQLMVSLPGEPHGTSAMPSMCPSLILQPCATTDPMLLQPQVMGPSASNQASVSATLEWQEML EAAEALLALKNSSQTRHQPCGMPGTAGERGLQLANPSMPPRPTSSGSLPSGHLDCMSLLT hide sequence

Protein Domains

Doublesex- and mab-3-related transcription factor

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D9R7-F1-model_v2	AlphaFold	Q9D9R7	1-182	view protein structure

RGD ID:

13681120

Promoter ID:

EPDNEW_M24709

Type:

single initiation site

Name:

Dmrtc1a_1

Description:

Mus musculus DMRT-like family C1a , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	X	102,908,687 - 102,908,747	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000031323	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000033686	ENTREZGENE
	ENSMUST00000033686.2	UniProtKB/Swiss-Prot
	ENSMUST00000119624	ENTREZGENE
	ENSMUST00000120808	ENTREZGENE
	ENSMUST00000120808.8	UniProtKB/Swiss-Prot
	ENSMUST00000121197	ENTREZGENE
	ENSMUST00000121197.8	UniProtKB/Swiss-Prot
InterPro	DMRT-C1/C2_C	UniProtKB/Swiss-Prot
KEGG Report	mmu:70887	UniProtKB/Swiss-Prot
MGD	MGI:1918137	ENTREZGENE
NCBI Gene	70887	ENTREZGENE
Pfam	DMRT-like	UniProtKB/Swiss-Prot
PhenoGen	Dmrtc1a	PhenoGen
UniProt	B1AX31	ENTREZGENE
	B1AX32	ENTREZGENE
	B1AX33	ENTREZGENE, UniProtKB/TrEMBL
	B1AX34	ENTREZGENE, UniProtKB/TrEMBL
	DMRTC_MOUSE	UniProtKB/Swiss-Prot
	Q2PMY0	ENTREZGENE
	Q9D5U3	ENTREZGENE
	Q9D9R7	ENTREZGENE
UniProt Secondary	B1AX31	UniProtKB/Swiss-Prot
	B1AX32	UniProtKB/Swiss-Prot
	Q2PMY0	UniProtKB/Swiss-Prot
	Q9D5U3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar