Tmem8b (transmembrane protein 8B) - Rat Genome Database

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Gene: Tmem8b (transmembrane protein 8B) Mus musculus
Analyze
Symbol: Tmem8b
Name: transmembrane protein 8B
RGD ID: 1618941
MGI Page MGI
Description: Predicted to be involved in cell-matrix adhesion. Predicted to be located in cell surface and plasma membrane. Orthologous to human TMEM8B (transmembrane protein 8B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930500O05Rik
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,668,971 - 43,692,668 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,668,971 - 43,692,668 (+)EnsemblGRCm39 Ensembl
GRCm38443,668,971 - 43,692,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,668,971 - 43,692,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,681,843 - 43,705,540 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,689,777 - 43,713,768 (+)NCBIMGSCv36mm8
Celera443,703,576 - 43,727,192 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:38355793  


Genomics

Comparative Map Data
Tmem8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,668,971 - 43,692,668 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,668,971 - 43,692,668 (+)EnsemblGRCm39 Ensembl
GRCm38443,668,971 - 43,692,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,668,971 - 43,692,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,681,843 - 43,705,540 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,689,777 - 43,713,768 (+)NCBIMGSCv36mm8
Celera443,703,576 - 43,727,192 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
TMEM8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,829,228 - 35,865,515 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,814,451 - 35,865,518 (+)EnsemblGRCh38hg38GRCh38
GRCh37935,829,225 - 35,865,512 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,819,222 - 35,844,844 (+)NCBINCBI36Build 36hg18NCBI36
Celera935,762,754 - 35,788,379 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,785,163 - 35,810,849 (+)NCBIHuRef
CHM1_1935,829,610 - 35,855,233 (+)NCBICHM1_1
T2T-CHM13v2.0935,849,899 - 35,886,190 (+)NCBIT2T-CHM13v2.0
Tmem8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,715,238 - 62,744,187 (+)NCBIGRCr8
mRatBN7.2557,919,473 - 57,948,419 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,919,804 - 57,946,772 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0559,165,552 - 59,193,772 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,178,846 - 59,191,975 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0563,690,420 - 63,718,562 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4560,146,431 - 60,173,161 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1560,146,190 - 60,172,805 (+)NCBI
Celera556,500,289 - 56,528,420 (+)NCBICelera
Cytogenetic Map5q22NCBI
Tmem8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472467,492 - 488,892 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955472467,027 - 489,287 (-)NCBIChiLan1.0ChiLan1.0
TMEM8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,734,373 - 88,763,052 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1988,738,359 - 88,768,990 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0935,679,698 - 35,704,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1936,478,735 - 36,507,303 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,482,289 - 36,507,300 (+)Ensemblpanpan1.1panPan2
TMEM8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,344,566 - 52,387,049 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,355,933 - 52,386,466 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,926,906 - 50,954,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01153,424,360 - 53,452,046 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1153,421,024 - 53,452,046 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,968,852 - 51,996,564 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,953,287 - 51,980,975 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,654,534 - 52,682,270 (+)NCBIUU_Cfam_GSD_1.0
Tmem8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,268,927 - 167,364,849 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,816,490 - 3,843,349 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,816,524 - 3,840,959 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,551,434 - 236,584,376 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,550,759 - 236,583,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,276,426 - 264,308,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219218
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,750,805 - 44,785,868 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236674312,126 - 15,310 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248684,924,116 - 4,956,325 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248684,925,096 - 4,956,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem8b
1129 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4647
Count of miRNA genes:738
Interacting mature miRNAs:979
Transcripts:ENSMUST00000107864, ENSMUST00000107865, ENSMUST00000107866, ENSMUST00000134869, ENSMUST00000141864, ENSMUST00000143339, ENSMUST00000143774, ENSMUST00000154112, ENSMUST00000167153
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001085508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK029713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB248373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO042254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000107864   ⟹   ENSMUSP00000103496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,669,287 - 43,692,668 (+)Ensembl
GRCm38.p6 Ensembl443,669,287 - 43,692,668 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107865   ⟹   ENSMUSP00000103497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,668,971 - 43,692,668 (+)Ensembl
GRCm38.p6 Ensembl443,668,971 - 43,692,668 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107866   ⟹   ENSMUSP00000103498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,669,506 - 43,692,668 (+)Ensembl
GRCm38.p6 Ensembl443,669,506 - 43,692,668 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,669,556 - 43,686,413 (+)Ensembl
GRCm38.p6 Ensembl443,669,556 - 43,686,413 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,674,460 - 43,686,205 (+)Ensembl
GRCm38.p6 Ensembl443,674,460 - 43,686,205 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143339   ⟹   ENSMUSP00000130133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,669,854 - 43,685,616 (+)Ensembl
GRCm38.p6 Ensembl443,669,854 - 43,685,616 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,669,915 - 43,681,312 (+)Ensembl
GRCm38.p6 Ensembl443,669,915 - 43,681,312 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,689,690 - 43,690,496 (+)Ensembl
GRCm38.p6 Ensembl443,689,690 - 43,690,496 (+)Ensembl
Ensembl Acc Id: ENSMUST00000167153   ⟹   ENSMUSP00000129760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,669,100 - 43,692,392 (+)Ensembl
GRCm38.p6 Ensembl443,669,100 - 43,692,392 (+)Ensembl
RefSeq Acc Id: NM_001085508   ⟹   NP_001078977
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,668,971 - 43,692,668 (+)NCBI
GRCm38443,668,971 - 43,692,668 (+)ENTREZGENE
MGSCv37443,681,843 - 43,705,540 (+)RGD
Celera443,703,576 - 43,727,192 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355718   ⟹   NP_001342647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,668,971 - 43,692,668 (+)NCBI
GRCm38443,668,971 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368840   ⟹   NP_001355769
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,307 - 43,692,665 (+)NCBI
GRCm38443,669,307 - 43,692,665 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368841   ⟹   NP_001355770
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,307 - 43,692,665 (+)NCBI
GRCm38443,669,307 - 43,692,665 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001368842   ⟹   NP_001355771
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,668,971 - 43,692,665 (+)NCBI
GRCm38443,668,971 - 43,692,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250028   ⟹   XP_011248330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,277 - 43,692,668 (+)NCBI
GRCm38443,669,267 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011250030   ⟹   XP_011248332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,274 - 43,692,668 (+)NCBI
GRCm38443,669,261 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253530   ⟹   XP_030109390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,299 - 43,692,668 (+)NCBI
GRCm38443,669,268 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253531   ⟹   XP_030109391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,274 - 43,692,668 (+)NCBI
GRCm38443,669,261 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253532   ⟹   XP_030109392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,674,563 - 43,692,668 (+)NCBI
GRCm38443,674,563 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253533   ⟹   XP_030109393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,299 - 43,692,668 (+)NCBI
GRCm38443,669,267 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164109   ⟹   XP_036020002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,845 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164110   ⟹   XP_036020003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,278 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001784142
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,669,277 - 43,692,668 (+)NCBI
GRCm38443,669,266 - 43,692,668 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001078977   ⟸   NM_001085508
- Peptide Label: isoform 1
- UniProtKB: B9EJV2 (UniProtKB/Swiss-Prot),   B1AWJ5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011248332   ⟸   XM_011250030
- Peptide Label: isoform X3
- UniProtKB: B9EJV2 (UniProtKB/Swiss-Prot),   B1AWJ5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011248330   ⟸   XM_011250028
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001342647   ⟸   NM_001355718
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001355771   ⟸   NM_001368842
- Peptide Label: isoform 5
RefSeq Acc Id: XP_030109391   ⟸   XM_030253531
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109393   ⟸   XM_030253533
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030109390   ⟸   XM_030253530
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001355770   ⟸   NM_001368841
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001355769   ⟸   NM_001368840
- Peptide Label: isoform 3
- UniProtKB: B1AWJ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109392   ⟸   XM_030253532
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000130133   ⟸   ENSMUST00000143339
Ensembl Acc Id: ENSMUSP00000103496   ⟸   ENSMUST00000107864
Ensembl Acc Id: ENSMUSP00000103498   ⟸   ENSMUST00000107866
Ensembl Acc Id: ENSMUSP00000103497   ⟸   ENSMUST00000107865
Ensembl Acc Id: ENSMUSP00000129760   ⟸   ENSMUST00000167153
RefSeq Acc Id: XP_036020003   ⟸   XM_036164110
- Peptide Label: isoform X3
- UniProtKB: B1AWJ5 (UniProtKB/Swiss-Prot),   B9EJV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036020002   ⟸   XM_036164109
- Peptide Label: isoform X2
Protein Domains
EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1AWJ5-F1-model_v2 AlphaFold B1AWJ5 1-472 view protein structure

Promoters
RGD ID:6883250
Promoter ID:EPDNEW_M5076
Type:initiation region
Name:Tmem8b_2
Description:Mus musculus transmembrane protein 8B , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5077  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38443,668,916 - 43,668,976EPDNEW
RGD ID:6883252
Promoter ID:EPDNEW_M5077
Type:initiation region
Name:Tmem8b_1
Description:Mus musculus transmembrane protein 8B , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5076  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38443,669,310 - 43,669,370EPDNEW
RGD ID:6836576
Promoter ID:MM_KWN:37381
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000107864,   ENSMUST00000107866,   OTTMUST00000016314,   OTTMUST00000016318,   OTTMUST00000016319,   OTTMUST00000016365
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36443,681,926 - 43,682,477 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441680 AgrOrtholog
Ensembl Genes ENSMUSG00000078716 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000107864 ENTREZGENE
  ENSMUST00000107864.8 UniProtKB/Swiss-Prot
  ENSMUST00000107865 ENTREZGENE
  ENSMUST00000107865.9 UniProtKB/Swiss-Prot
  ENSMUST00000107866 ENTREZGENE
  ENSMUST00000107866.9 UniProtKB/TrEMBL
  ENSMUST00000143339.8 UniProtKB/TrEMBL
  ENSMUST00000167153.8 UniProtKB/Swiss-Prot
InterPro EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NGX6/PGAP6/MYMK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:242409 UniProtKB/Swiss-Prot
MGD MGI:2441680 ENTREZGENE
NCBI Gene 242409 ENTREZGENE
PANTHER PTHR14319 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SI:DKEY-84J12.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3522 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem8b PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AWJ4 ENTREZGENE, UniProtKB/TrEMBL
  B1AWJ5 ENTREZGENE
  B9EJV2 ENTREZGENE
  E9Q7V8_MOUSE UniProtKB/TrEMBL
  TMM8B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B9EJV2 UniProtKB/Swiss-Prot