4933402J07Rik (RIKEN cDNA 4933402J07 gene) - Rat Genome Database
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Gene: 4933402J07Rik (RIKEN cDNA 4933402J07 gene) Mus musculus
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Symbol: 4933402J07Rik
Name: RIKEN cDNA 4933402J07 gene
RGD ID: 1618778
MGI Page MGI
Description: Orthologous to human C16orf78 (chromosome 16 open reading frame 78); INTERACTS WITH benzo[a]pyrene (ortholog); bis(2-ethylhexyl) phthalate (ortholog); bisphenol A (ortholog).
Type: protein-coding
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC330820; uncharacterized protein C16orf78 homolog; uncharacterized protein LOC330820
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,290,535 - 88,315,825 (+)NCBIGRCm39mm39
GRCm38887,563,907 - 87,589,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl887,563,853 - 87,589,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv37890,087,806 - 90,113,096 (+)NCBIGRCm37mm9NCBIm37
MGSCv36890,454,012 - 90,479,302 (+)NCBImm8
Celera891,829,032 - 91,854,280 (+)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Comparative Map Data
4933402J07Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,290,535 - 88,315,825 (+)NCBIGRCm39mm39
GRCm38887,563,907 - 87,589,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl887,563,853 - 87,589,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv37890,087,806 - 90,113,096 (+)NCBIGRCm37mm9NCBIm37
MGSCv36890,454,012 - 90,479,302 (+)NCBImm8
Celera891,829,032 - 91,854,280 (+)NCBICelera
Cytogenetic Map8C3NCBI
C16orf78
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1649,373,804 - 49,399,431 (+)EnsemblGRCh38hg38GRCh38
GRCh381649,373,804 - 49,399,431 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371649,407,808 - 49,433,321 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361647,965,309 - 47,990,822 (+)NCBINCBI36hg18NCBI36
Celera1633,919,770 - 33,945,283 (+)NCBI
Cytogenetic Map16q12.1NCBI
HuRef1635,297,431 - 35,322,944 (+)NCBIHuRef
CHM1_11650,814,643 - 50,840,266 (+)NCBICHM1_1
LOC680913
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01920,483,348 - 20,509,072 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1920,483,361 - 20,508,711 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01931,494,308 - 31,519,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41920,816,710 - 20,841,478 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1919,364,801 - 19,390,525 (-)NCBICelera
Cytogenetic Map19p11NCBI
LOC102012466
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554337,603,234 - 7,620,319 (+)NCBIChiLan1.0ChiLan1.0
C16H16orf78
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11648,522,313 - 48,547,900 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1648,522,313 - 48,547,900 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01629,634,536 - 29,660,125 (+)NCBIMhudiblu_PPA_v0panPan3
C2H16orf78
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl265,859,569 - 65,880,672 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1265,866,069 - 65,880,700 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH16orf78
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364752,585,895 - 2,611,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H16orf78
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl635,394,373 - 35,409,895 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1635,394,618 - 35,409,614 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH16orf78
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl535,165,542 - 35,189,373 (+)Ensembl
ChlSab1.1535,165,260 - 35,189,510 (+)NCBI
CUNH16orf78
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247577,147,930 - 7,170,258 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined885716921119717069Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined885716921119717069Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined885716921119717069Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:99
Interacting mature miRNAs:104
Transcripts:ENSMUST00000093342
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093342   ⟹   ENSMUSP00000091033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl887,563,853 - 87,589,424 (+)Ensembl
RefSeq Acc Id: NM_177901   ⟹   NP_808569
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39888,290,535 - 88,315,825 (+)NCBI
GRCm38887,563,907 - 87,589,197 (+)ENTREZGENE
MGSCv37890,087,806 - 90,113,096 (+)RGD
Celera891,829,032 - 91,854,280 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_808569 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI17079 (Get FASTA)   NCBI Sequence Viewer  
  AAI20780 (Get FASTA)   NCBI Sequence Viewer  
  BAC36603 (Get FASTA)   NCBI Sequence Viewer  
  BAE21437 (Get FASTA)   NCBI Sequence Viewer  
  EDL11041 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_808569   ⟸   NM_177901
- UniProtKB: Q8BHX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000091033   ⟸   ENSMUST00000093342

Promoters
RGD ID:8667797
Promoter ID:EPDNEW_M11930
Type:initiation region
Name:4933402J07Rik_1
Description:Mus musculus RIKEN cDNA 4933402J07 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38887,563,894 - 87,563,954EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3607717 AgrOrtholog
Ensembl Genes ENSMUSG00000069971 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000091033 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000093342 ENTREZGENE, UniProtKB/TrEMBL
InterPro DUF4638 UniProtKB/TrEMBL
KEGG Report mmu:330820 UniProtKB/TrEMBL
MGD MGI:3607717 ENTREZGENE
NCBI Gene 330820 ENTREZGENE
PANTHER PTHR35679 UniProtKB/TrEMBL
Pfam DUF4638 UniProtKB/TrEMBL
PhenoGen 4933402J07Rik PhenoGen
UniGene Mm.212913 ENTREZGENE
UniProt Q3V0R6_MOUSE UniProtKB/TrEMBL
  Q8BHX0 ENTREZGENE, UniProtKB/TrEMBL