4933402J07Rik (RIKEN cDNA 4933402J07 gene)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: 4933402J07Rik (RIKEN cDNA 4933402J07 gene) Mus musculus

Analyze

Symbol:

4933402J07Rik

Name:

RIKEN cDNA 4933402J07 gene

RGD ID:

1618778

MGI Page

MGI

Description:

Orthologous to human C16orf78 (chromosome 16 open reading frame 78); INTERACTS WITH benzo[a]pyrene (ortholog); bis(2-ethylhexyl) phthalate (ortholog); bisphenol A (ortholog).

Type:

protein-coding

RefSeq Status:

PREDICTED

Also known as:

hypothetical protein LOC330820; uncharacterized protein C16orf78 homolog; uncharacterized protein LOC330820

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,290,535 - 88,315,825 (+)	NCBI	GRCm39		mm39
GRCm38	8	87,563,907 - 87,589,197 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	87,563,853 - 87,589,424 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	90,087,806 - 90,113,096 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	90,454,012 - 90,479,302 (+)	NCBI			mm8
Celera	8	91,829,032 - 91,854,280 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

copper(II) sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Molecular Function

molecular_function (ND)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:21677750

Genomics

Comparative Map Data

4933402J07Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,290,535 - 88,315,825 (+)	NCBI	GRCm39		mm39
GRCm38	8	87,563,907 - 87,589,197 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	87,563,853 - 87,589,424 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	90,087,806 - 90,113,096 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	90,454,012 - 90,479,302 (+)	NCBI			mm8
Celera	8	91,829,032 - 91,854,280 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

C16orf78
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	49,373,804 - 49,399,431 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	49,373,804 - 49,399,431 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	49,407,808 - 49,433,321 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	47,965,309 - 47,990,822 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	16	33,919,770 - 33,945,283 (+)	NCBI
Cytogenetic Map	16	q12.1	NCBI
HuRef	16	35,297,431 - 35,322,944 (+)	NCBI		HuRef
CHM1_1	16	50,814,643 - 50,840,266 (+)	NCBI		CHM1_1

LOC680913
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	19	20,483,348 - 20,509,072 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	20,483,361 - 20,508,711 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	31,494,308 - 31,519,661 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	20,816,710 - 20,841,478 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	19	19,364,801 - 19,390,525 (-)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

LOC102012466
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955433	7,603,234 - 7,620,319 (+)	NCBI	ChiLan1.0	ChiLan1.0

C16H16orf78
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	48,522,313 - 48,547,900 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	48,522,313 - 48,547,900 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	29,634,536 - 29,660,125 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

C2H16orf78
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	2	65,859,569 - 65,880,672 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	2	65,866,069 - 65,880,700 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

CUNH16orf78
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936475	2,585,895 - 2,611,173 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H16orf78
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	35,394,373 - 35,409,895 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	35,394,618 - 35,409,614 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CUNH16orf78
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	5	35,165,542 - 35,189,373 (+)	Ensembl
ChlSab1.1	5	35,165,260 - 35,189,510 (+)	NCBI

CUNH16orf78
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624757	7,147,930 - 7,170,258 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	78518613	112518703	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79082178	113082403	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80066775	89014359	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81092664	115092664	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	81619151	115619151	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	84759576	118759741	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	85716921	119717069	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	85716921	119717069	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	85716921	119717069	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	107
Count of miRNA genes:	99
Interacting mature miRNAs:	104
Transcripts:	ENSMUST00000093342
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_177901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC171684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC117078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000093342 ⟹ ENSMUSP00000091033

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	87,563,853 - 87,589,424 (+)	Ensembl

RefSeq Acc Id:

NM_177901 ⟹ NP_808569

RefSeq Status:

PREDICTED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	88,290,535 - 88,315,825 (+)	NCBI
GRCm38	8	87,563,907 - 87,589,197 (+)	ENTREZGENE
MGSCv37	8	90,087,806 - 90,113,096 (+)	RGD
Celera	8	91,829,032 - 91,854,280 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GTCACTACATCCAGAGGCCACATCCTGCCTCTGACTCCCACACCAGCCAATCCAGGATCCAGAG
AGAAGAGTGACAGACTCTGTTGTAGGGCACAGCTGAGATAGCAACATGACAGAAGTGGTAGAAG
ACACCGAGAATCTGATGCCCACTGAGAGGAAGTCCTTCTGGAGGTCAGCTGAGGAGAGGCGAAT
GTCTGACCTGACCCGGGTGCTGGAGTGGCTGGAGCGGAGGCAGGGCAAGAAGCGCGCCCTTCAG
AAAAAGAAGGAAGAGACAAAGAGTACAGAAGAGAAGGCAGGAAAGAAAAACGTAGGCGCTAAGA
AGAAGCTAGAAAAAGTCAGCCGCAAAGTGACCTTCCACAAGGGCTACGTACGTCCTGTCAAGAA
GAAGGAACCCACCATTTACCACAAGAGAAATGAAATAGACCTAAAGAGCAAGCGTCTGAGCATG
ATCACTGCCAACTTCAGGGATAGCAATAAGAAGTCTGGTCAGTCTGGATCCAGAAGAACATCGG
AGAGCACAGACATAGACATCAAGGATGTTATAGCCCTAGAAACCAACAGTCGGGTAAGCGCTTT
CCGAAGACAAAGCTCTGTAGATCCTGGAATTCAGGAAGGTATGTTTGGCAGCCGGAGGGCAGGC
ATCCTGAGAGAATGGGCAAACAAGGCTCCCGACAACAACTATGAACGCAAGCTGAAGAGCCTTA
TGGAGAAGGGCATGGATCCCAAGATGGAGATCAGCAAGATGCTGAAGCCAGAGGAGGTGCTGAG
CTGCCGATACCTGCGTTTGTCCAAGAACAACATCAAGACCTTGATCAAGCTGTGCAAGGATGCA
GGGATGGATGTGGACATCCACCCCCACATGGTGGAGGCCGAGATAGACGCAAAGAAGATCTTCG
GACAGCGATTAAGCGTAGCACTCTAGCCGCTCTGCCCACTGGAGACTCATCCCTTGGCGACTAA
GCACCCTGTTAACTAGCTTCTGTAGACCGCACCAGGCGAATAAGTCAAATGCATCACACTAGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_808569	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI17079	(Get FASTA)	NCBI Sequence Viewer
	AAI20780	(Get FASTA)	NCBI Sequence Viewer
	BAC36603	(Get FASTA)	NCBI Sequence Viewer
	BAE21437	(Get FASTA)	NCBI Sequence Viewer
	EDL11041	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_808569 ⟸ NM_177901

- UniProtKB:

Q8BHX0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTEVVEDTENLMPTERKSFWRSAEERRMSDLTRVLEWLERRQGKKRALQKKKEETKSTEEKAGK
KNVGAKKKLEKVSRKVTFHKGYVRPVKKKEPTIYHKRNEIDLKSKRLSMITANFRDSNKKSGQS
GSRRTSESTDIDIKDVIALETNSRVSAFRRQSSVDPGIQEGMFGSRRAGILREWANKAPDNNYE
RKLKSLMEKGMDPKMEISKMLKPEEVLSCRYLRLSKNNIKTLIKLCKDAGMDVDIHPHMVEAEI
DAKKIFGQRLSVAL

hide sequence

RefSeq Acc Id:

ENSMUSP00000091033 ⟸ ENSMUST00000093342

Promoters

RGD ID:

8667797

Promoter ID:

EPDNEW_M11930

Type:

initiation region

Name:

4933402J07Rik_1

Description:

Mus musculus RIKEN cDNA 4933402J07 gene , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	87,563,894 - 87,563,954	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3607717	AgrOrtholog
Ensembl Genes	ENSMUSG00000069971	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000091033	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000093342	ENTREZGENE, UniProtKB/TrEMBL
InterPro	DUF4638	UniProtKB/TrEMBL
KEGG Report	mmu:330820	UniProtKB/TrEMBL
MGD	MGI:3607717	ENTREZGENE
NCBI Gene	330820	ENTREZGENE
PANTHER	PTHR35679	UniProtKB/TrEMBL
Pfam	DUF4638	UniProtKB/TrEMBL
PhenoGen	4933402J07Rik	PhenoGen
UniGene	Mm.212913	ENTREZGENE
UniProt	Q3V0R6_MOUSE	UniProtKB/TrEMBL
	Q8BHX0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)