CUNH16orf78 (chromosome unknown C16orf78 homolog)

Gene: CUNH16orf78 (chromosome unknown C16orf78 homolog) Chlorocebus sabaeus

Analyze

Symbol:

CUNH16orf78 (Ensembl: C16orf78)

Name:

chromosome unknown C16orf78 homolog (Ensembl:chromosome 16 open reading frame 78)

RGD ID:

18431745

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C5H16orf78; chromosome 5 open reading frame, human C16orf78; uncharacterized protein C16orf78 homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	35,165,260 - 35,189,510 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	35,165,542 - 35,189,373 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	41,313,770 - 41,338,122 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

References

Genomics

Comparative Map Data

CUNH16orf78
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	35,165,260 - 35,189,510 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	35,165,542 - 35,189,373 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	41,313,770 - 41,338,122 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C16orf78
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	49,373,804 - 49,399,431 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	49,373,804 - 49,399,431 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	49,407,715 - 49,433,342 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	47,965,309 - 47,990,822 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	33,919,770 - 33,945,283 (+)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI
HuRef	16	35,297,431 - 35,322,944 (+)	NCBI		HuRef
CHM1_1	16	50,814,732 - 50,840,245 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	55,171,560 - 55,197,187 (+)	NCBI		T2T-CHM13v2.0

4933402J07Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,290,535 - 88,315,825 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	88,290,481 - 88,316,052 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	87,563,907 - 87,589,197 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	87,563,853 - 87,589,424 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	90,087,806 - 90,113,096 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	90,454,012 - 90,479,302 (+)	NCBI		MGSCv36	mm8
Celera	8	91,829,032 - 91,854,280 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI
cM Map	8	42.21	NCBI

C19h16orf78
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	35,657,645 - 35,683,019 (-)	NCBI		GRCr8
mRatBN7.2	19	19,484,248 - 19,509,632 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	19,483,882 - 19,509,469 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	19	20,483,348 - 20,509,072 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	20,483,361 - 20,508,711 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	31,494,308 - 31,519,661 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	20,816,710 - 20,841,478 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	19,364,801 - 19,390,525 (-)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

CUNH16orf78
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955433	7,603,234 - 7,620,319 (+)	NCBI	ChiLan1.0	ChiLan1.0

C18H16orf78
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	58,828,598 - 58,862,989 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	64,733,929 - 64,767,922 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	29,634,536 - 29,660,125 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	48,522,313 - 48,547,900 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	48,522,313 - 48,547,900 (+)	Ensembl	panpan1.1		panPan2

C2H16orf78
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	65,866,069 - 65,880,700 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	65,859,569 - 65,880,672 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	62,443,308 - 62,457,713 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	66,416,892 - 66,431,320 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	66,412,367 - 66,431,296 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	63,240,320 - 63,254,721 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	64,260,125 - 64,274,753 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	65,148,584 - 65,163,031 (-)	NCBI		UU_Cfam_GSD_1.0

CUNH16orf78
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	56,977,687 - 57,003,218 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936475	2,585,895 - 2,611,173 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H16orf78
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	35,393,669 - 35,409,872 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	35,394,618 - 35,409,614 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CUNH16orf78
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	7,147,835 - 7,170,324 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	7,147,930 - 7,170,258 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low		14
Below cutoff	3	3	16

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007992657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000003441 ⟹ ENSCSAP00000001719

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	5	35,165,542 - 35,189,373 (+)	Ensembl

RefSeq Acc Id:

XM_007992657 ⟹ XP_007990848

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	35,165,260 - 35,189,510 (+)	NCBI
Vero_WHO_p1.0	NW_023666047	41,313,770 - 41,338,122 (-)	NCBI

Sequence:

show sequence

GTAGTGGCCACATGGGGAACAGTGGGAGATGGCCAATGTCTCACCTCTACTCTGACCCCAGAGC
CAGCTACCAAGCCTGGCAATGACCTCACAATCACTCCCCAGGCCTTCCACCCTTTAAAGCCAAT
ATCCCAGTGTCTTTGCTCACTCTGCCCTTTATGTTCACATCTGGAGGCCACACCTTACCTTCTG
AATCACCAGGCCATCGAGTCCAGATAAAGGGATCAAGAGAGTGAGAGAGTGCCAGCCGCCTCCC
ACCCAAGCCACTAGCAACACTCCACAATGTCAGAGCAACCAGTGTACCTGAAGGATTTAATGCC
CACAAAGAGGAAATCCATGTGGAAGACTGTCGAAGAGAGGCGCATGTCTGACCTCACCCGTGTG
CTGGAGTGGCTGGAGCGGAGGCAGGGGAAGAAGAAACAAGCTCCCGAGAAGCAAAAGCCCAAAG
TGGTGATAGTCCTTAAAGGAAATGAGAAGAAGGAAGAGAAGAAAGGCAAAGGCCTCATGACGGC
ACGGGGAGGGAACCACAAGGCCACGCAGACTTCCCAGCAGGCCTTAGGAAAGAGGTTCAGGAAG
GACAAGGATGCTGTCTCCTACCGAAGGCTCTATGGAGTGGAGCAAAAGGGAAAACGCCTCAGCA
TGGTCCCTGGCAGCTACGTCAAGGATGGCCCCAAGAAATCTGATACAGATATCAAGGATGCAGT
CGACCCAGAGTCTACTCAGCGGCCAAACCCATTCCGTCGACAAAGCGTTGTCTTAGATCCCATG
TTACAGGACGGTACCCTTAGCAGCCGGAGGGCAAACTTCATGAGAGACTGGTCCAACAAGATGC
CTGACATGGCTTACGAACGCAAGCTAAAGAGCCTCATGGAGAAAAGCACCGAGCCTAAGATGGA
AACCATAAGGATGCTGAAGCCAGATGAGGTGCTGAGCTGCCGATACCTGAGGTTGTCCAAGGAG
AACATTCGGACCTTGCTCAAGCTGTGCAAGGATGCAGGAATGAATGTGGATATCCACCCCCACA
TGGTCGAAGGGGACATAGACGCTAAAAAGGTGTTCACCGGAATACGCTGTGTGGCACTCTAAAT
AGCTCCTCTCGCCGCCACCTTCAGGCTCCTTCTGTCATGGGACCCTTCGTCTCCAGATGCCATC
CTCTGGCATACTACAAGTGGTCCTTCCAACCTAGTGCATCCCTTTAGAAAATAAGCAATCAGAA
AACAAGC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007990848	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001719.1

RefSeq Acc Id:	XP_007990848 ⟸ XM_007992657
- UniProtKB:	A0A0D9QZD0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000001719 ⟸ ENSCSAT00000003441

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005410	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003441.1	UniProtKB/TrEMBL
InterPro	DUF4638	UniProtKB/TrEMBL
KEGG Report	csab:103232539	UniProtKB/TrEMBL
NCBI Gene	C5H16orf78	ENTREZGENE
PANTHER	PTHR35679	UniProtKB/TrEMBL
	RIKEN CDNA 4933402J07 GENE	UniProtKB/TrEMBL
Pfam	DUF4638	UniProtKB/TrEMBL
UniProt	A0A0D9QZD0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-08	CUNH16orf78	chromosome unknown C16orf78 homolog	C5H16orf78	chromosome 5 open reading frame, human C16orf78	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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