4921504E06Rik (RIKEN cDNA 4921504E06 gene) - Rat Genome Database

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Gene: 4921504E06Rik (RIKEN cDNA 4921504E06 gene) Mus musculus
Analyze
Symbol: 4921504E06Rik
Name: RIKEN cDNA 4921504E06 gene
RGD ID: 1618334
MGI Page MGI
Description: Orthologous to human C10orf67 (chromosome 10 open reading frame 67).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4921522E24Rik; hypothetical protein LOC70909; RP24-189E15.1; uncharacterized protein C10orf67 homolog; uncharacterized protein C10orf67 homolog, mitochondrial; uncharacterized protein LOC70909
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39219,467,648 - 19,558,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl219,467,648 - 19,558,725 (-)EnsemblGRCm39 Ensembl
GRCm38219,462,837 - 19,553,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl219,462,837 - 19,553,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv37219,384,464 - 19,475,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36219,380,591 - 19,471,664 (-)NCBIMGSCv36mm8
Celera219,361,899 - 19,453,082 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map213.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16039563   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
4921504E06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39219,467,648 - 19,558,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl219,467,648 - 19,558,725 (-)EnsemblGRCm39 Ensembl
GRCm38219,462,837 - 19,553,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl219,462,837 - 19,553,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv37219,384,464 - 19,475,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36219,380,591 - 19,471,664 (-)NCBIMGSCv36mm8
Celera219,361,899 - 19,453,082 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map213.4NCBI
C10orf67
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381023,201,916 - 23,344,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1023,202,696 - 23,344,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371023,490,845 - 23,633,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361023,645,526 - 23,673,778 (-)NCBINCBI36Build 36hg18NCBI36
Build 341023,645,526 - 23,673,778NCBI
Celera1023,293,123 - 23,322,454 (-)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1023,265,648 - 23,294,689 (-)NCBIHuRef
CHM1_11023,606,039 - 23,634,174 (-)NCBICHM1_1
T2T-CHM13v2.01023,220,910 - 23,364,923 (-)NCBIT2T-CHM13v2.0
C17h10orf67
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,970,801 - 87,082,723 (-)NCBIGRCr8
mRatBN7.21782,062,461 - 82,174,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1782,071,838 - 82,174,353 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01786,227,106 - 86,322,177 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1786,239,087 - 86,322,144 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01787,915,286 - 88,032,655 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41793,515,546 - 93,620,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1781,351,127 - 81,446,290 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
LOC102011029
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554295,674,076 - 5,798,289 (+)NCBIChiLan1.0ChiLan1.0
C8H10orf67
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2835,884,421 - 36,040,147 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11035,889,751 - 36,046,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01023,366,945 - 23,516,413 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11023,808,475 - 23,889,194 (-)NCBIpanpan1.1PanPan1.1panPan2
C2H10orf67
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.129,864,753 - 10,061,384 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl29,900,035 - 10,067,876 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha28,556,863 - 8,753,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.028,067,182 - 8,257,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl28,102,265 - 8,256,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.127,433,695 - 7,622,939 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.027,517,150 - 7,705,529 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027,684,439 - 7,874,235 (+)NCBIUU_Cfam_GSD_1.0
CUNH10orf67
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934422,990,835 - 23,123,127 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365204,837,373 - 4,968,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C10H10orf67
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1051,683,329 - 51,812,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11051,683,170 - 51,812,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21057,337,683 - 57,470,019 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH10orf67
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,975,457 - 23,085,011 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605128,739,338 - 28,874,524 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH10orf67
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247965,423,959 - 5,466,321 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4921504E06Rik
4209 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:130
Interacting mature miRNAs:140
Transcripts:ENSMUST00000062060, ENSMUST00000131199
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000062060   ⟹   ENSMUSP00000058720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl219,467,648 - 19,558,725 (-)Ensembl
GRCm38.p6 Ensembl219,462,837 - 19,553,914 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl219,498,510 - 19,558,725 (-)Ensembl
GRCm38.p6 Ensembl219,493,699 - 19,553,914 (-)Ensembl
RefSeq Acc Id: NM_027600   ⟹   NP_081876
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39219,467,648 - 19,558,721 (-)NCBI
GRCm38219,462,837 - 19,553,910 (-)ENTREZGENE
MGSCv37219,384,464 - 19,475,537 (-)RGD
Celera219,361,899 - 19,453,082 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_081876   ⟸   NM_027600
- UniProtKB: Q8CET2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000058720   ⟸   ENSMUST00000062060
Protein Domains
DUF4709   DUF4724

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CET2-F1-model_v2 AlphaFold Q8CET2 1-560 view protein structure

Promoters
RGD ID:6832603
Promoter ID:MM_KWN:27926
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000028067,   OTTMUST00000026915,   OTTMUST00000026916
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36219,475,549 - 19,476,049 (-)MPROMDB
RGD ID:6876450
Promoter ID:EPDNEW_M1676
Type:multiple initiation site
Name:4921504E06Rik_1
Description:Mus musculus RIKEN cDNA 4921504E06 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38219,553,914 - 19,553,974EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918087 AgrOrtholog
Ensembl Genes ENSMUSG00000026734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062060 ENTREZGENE
  ENSMUST00000062060.5 UniProtKB/TrEMBL
InterPro C10orf67-like UniProtKB/TrEMBL
  DUF4709 UniProtKB/TrEMBL
  DUF4724 UniProtKB/TrEMBL
KEGG Report mmu:70909 UniProtKB/TrEMBL
MGD MGI:1918087 ENTREZGENE
NCBI Gene 4921504E06Rik ENTREZGENE
PANTHER PTHR22382 UniProtKB/TrEMBL
  RIKEN CDNA 4921504E06 GENE UniProtKB/TrEMBL
Pfam DUF4709 UniProtKB/TrEMBL
  DUF4724 UniProtKB/TrEMBL
PhenoGen 4921504E06Rik PhenoGen
UniProt Q8CET2 ENTREZGENE, UniProtKB/TrEMBL
  Q9D5T8_MOUSE UniProtKB/TrEMBL