C10orf67 (chromosome 10 open reading frame 67) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: C10orf67 (chromosome 10 open reading frame 67) Homo sapiens
Analyze
Symbol: C10orf67
Name: chromosome 10 open reading frame 67
RGD ID: 1350054
HGNC Page HGNC:28716
Description: Predicted to be located in mitochondrion.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bA215C7.4; C10orf115; hypothetical protein LOC256815; LINC01552; long intergenic non-protein coding RNA 1552; MGC46732; RP11-792P23.2; uncharacterized protein C10orf67; uncharacterized protein C10orf67, mitochondrial
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381023,201,916 - 23,344,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1023,202,696 - 23,344,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371023,490,845 - 23,633,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361023,645,526 - 23,673,778 (-)NCBINCBI36Build 36hg18NCBI36
Build 341023,645,526 - 23,673,778NCBI
Celera1023,293,123 - 23,322,454 (-)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1023,265,648 - 23,294,689 (-)NCBIHuRef
CHM1_11023,606,039 - 23,634,174 (-)NCBICHM1_1
T2T-CHM13v2.01023,220,910 - 23,364,923 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:11181995   PMID:15164054   PMID:15489334   PMID:18723019   PMID:27812135   PMID:32296183   PMID:34692117  


Genomics

Comparative Map Data
C10orf67
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381023,201,916 - 23,344,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1023,202,696 - 23,344,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371023,490,845 - 23,633,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361023,645,526 - 23,673,778 (-)NCBINCBI36Build 36hg18NCBI36
Build 341023,645,526 - 23,673,778NCBI
Celera1023,293,123 - 23,322,454 (-)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1023,265,648 - 23,294,689 (-)NCBIHuRef
CHM1_11023,606,039 - 23,634,174 (-)NCBICHM1_1
T2T-CHM13v2.01023,220,910 - 23,364,923 (-)NCBIT2T-CHM13v2.0
4921504E06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39219,467,648 - 19,558,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl219,467,648 - 19,558,725 (-)EnsemblGRCm39 Ensembl
GRCm38219,462,837 - 19,553,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl219,462,837 - 19,553,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv37219,384,464 - 19,475,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36219,380,591 - 19,471,664 (-)NCBIMGSCv36mm8
Celera219,361,899 - 19,453,082 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map213.4NCBI
C17h10orf67
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,970,801 - 87,082,723 (-)NCBIGRCr8
mRatBN7.21782,062,461 - 82,174,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1782,071,838 - 82,174,353 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01786,227,106 - 86,322,177 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1786,239,087 - 86,322,144 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01787,915,286 - 88,032,655 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41793,515,546 - 93,620,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1781,351,127 - 81,446,290 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
LOC102011029
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554295,674,076 - 5,798,289 (+)NCBIChiLan1.0ChiLan1.0
C8H10orf67
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2835,884,421 - 36,040,147 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11035,889,751 - 36,046,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01023,366,945 - 23,516,413 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11023,808,475 - 23,889,194 (-)NCBIpanpan1.1PanPan1.1panPan2
C2H10orf67
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.129,864,753 - 10,061,384 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl29,900,035 - 10,067,876 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha28,556,863 - 8,753,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.028,067,182 - 8,257,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl28,102,265 - 8,256,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.127,433,695 - 7,622,939 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.027,517,150 - 7,705,529 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027,684,439 - 7,874,235 (+)NCBIUU_Cfam_GSD_1.0
CUNH10orf67
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934422,990,835 - 23,123,127 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365204,837,373 - 4,968,939 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C10H10orf67
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1051,683,329 - 51,812,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11051,683,170 - 51,812,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21057,337,683 - 57,470,019 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH10orf67
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,975,457 - 23,085,011 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605128,739,338 - 28,874,524 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH10orf67
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247965,423,959 - 5,466,321 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C10orf67
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001371909.1(C10orf67):c.851-537C>T single nucleotide variant Type 2 diabetes mellitus [RCV000626377] Chr10:23290495 [GRCh38]
Chr10:23579424 [GRCh37]
Chr10:10p12.2
benign
NM_001371909.1(C10orf67):c.1434+6169G>A single nucleotide variant Type 2 diabetes mellitus [RCV000626383] Chr10:23233560 [GRCh38]
Chr10:23522489 [GRCh37]
Chr10:10p12.2
benign
GRCh38/hg38 10p15.3-12.1(chr10:90421-29058318)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053512]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053512]|See cases [RCV000053512] Chr10:90421..29058318 [GRCh38]
Chr10:224406..29347247 [GRCh37]
Chr10:126361..29387253 [NCBI36]
Chr10:10p15.3-12.1
pathogenic
NM_153714.2(C10orf67):c.210-710C>A single nucleotide variant Lung cancer [RCV000108922] Chr10:23333892 [GRCh38]
Chr10:23622821 [GRCh37]
Chr10:10p12.2
uncertain significance
GRCh38/hg38 10p15.3-12.1(chr10:90205-26339978)x3 copy number gain See cases [RCV000138428] Chr10:90205..26339978 [GRCh38]
Chr10:224406..26628907 [GRCh37]
Chr10:126145..26668913 [NCBI36]
Chr10:10p15.3-12.1
pathogenic
GRCh38/hg38 10p12.31-11.22(chr10:19088161-32732293)x3 copy number gain See cases [RCV000139427] Chr10:19088161..32732293 [GRCh38]
Chr10:19377090..33021221 [GRCh37]
Chr10:19417096..33061227 [NCBI36]
Chr10:10p12.31-11.22
likely pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22
benign
NC_000010.11:g.23296046G>A single nucleotide variant Lung cancer [RCV000108921] Chr10:23296046 [GRCh38]
Chr10:23584975 [GRCh37]
Chr10:10p12.2
uncertain significance
NM_001371909.1(C10orf67):c.1200+6658G>T single nucleotide variant Type 2 diabetes mellitus [RCV000626378] Chr10:23259604 [GRCh38]
Chr10:23548533 [GRCh37]
Chr10:10p12.2
benign
GRCh37/hg19 10p15.3-11.23(chr10:100026-30278548)x3 copy number gain See cases [RCV000447131] Chr10:100026..30278548 [GRCh37]
Chr10:10p15.3-11.23
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23
pathogenic
NM_001371909.1(C10orf67):c.1201-4652A>G single nucleotide variant Type 2 diabetes mellitus [RCV000626381] Chr10:23255343 [GRCh38]
Chr10:23544272 [GRCh37]
Chr10:10p12.2
benign
NM_001371909.1(C10orf67):c.910-1375T>G single nucleotide variant Type 2 diabetes mellitus [RCV000626380] Chr10:23283453 [GRCh38]
Chr10:23572382 [GRCh37]
Chr10:10p12.2
benign
GRCh37/hg19 10p12.2(chr10:23580058-23635874)x0 copy number loss not provided [RCV000737040] Chr10:23580058..23635874 [GRCh37]
Chr10:10p12.2
benign
GRCh37/hg19 10p12.2(chr10:23624156-23635612)x0 copy number loss not provided [RCV000737041] Chr10:23624156..23635612 [GRCh37]
Chr10:10p12.2
benign
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
NM_001371909.1(C10orf67):c.1570+4090T>C single nucleotide variant Pancreatic agenesis 2 [RCV003126284] Chr10:23219508 [GRCh38]
Chr10:23508437 [GRCh37]
Chr10:10p12.2
pathogenic
NM_001371909.1(C10orf67):c.1570+3798G>A single nucleotide variant not provided [RCV001709990] Chr10:23219800 [GRCh38]
Chr10:23508729 [GRCh37]
Chr10:10p12.2
benign
NM_001371909.1(C10orf67):c.1570+4504C>T single nucleotide variant not provided [RCV001668924] Chr10:23219094 [GRCh38]
Chr10:23508023 [GRCh37]
Chr10:10p12.2
benign
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22
not provided
GRCh37/hg19 10p15.1-11.21(chr10:6273934-34732521) copy number gain not specified [RCV002052863] Chr10:6273934..34732521 [GRCh37]
Chr10:10p15.1-11.21
pathogenic
NM_001371909.1(C10orf67):c.20G>A (p.Arg7His) single nucleotide variant Inborn genetic diseases [RCV002764506] Chr10:23344755 [GRCh38]
Chr10:23633684 [GRCh37]
Chr10:10p12.2
uncertain significance
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3
pathogenic
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1090
Count of miRNA genes:696
Interacting mature miRNAs:783
Transcripts:ENST00000323327, ENST00000376500
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G09328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371023,626,025 - 23,626,105UniSTSGRCh37
Build 361023,666,031 - 23,666,111RGDNCBI36
Celera1023,314,707 - 23,314,787RGD
Cytogenetic Map10p12.2UniSTS
HuRef1023,286,514 - 23,286,594UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 113 2
Low 19 10 315 7 29 7 926 20 1121 235 417 582 6 645
Below cutoff 2032 1700 1125 305 950 211 2431 1869 2490 153 697 903 98 806 1574 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001351306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047424968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047424970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001747077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_930487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_930488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL139281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM976076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000323327   ⟹   ENSP00000321464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1023,316,737 - 23,344,845 (-)Ensembl
RefSeq Acc Id: ENST00000376500   ⟹   ENSP00000365683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1023,267,195 - 23,343,964 (-)Ensembl
RefSeq Acc Id: ENST00000376501   ⟹   ENSP00000490237
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1023,202,696 - 23,344,694 (-)Ensembl
RefSeq Acc Id: ENST00000636213   ⟹   ENSP00000490528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1023,202,696 - 23,344,797 (-)Ensembl
RefSeq Acc Id: ENST00000649478   ⟹   ENSP00000497121
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1023,302,081 - 23,344,678 (-)Ensembl
RefSeq Acc Id: ENST00000673651   ⟹   ENSP00000501139
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1023,316,591 - 23,344,843 (-)Ensembl
RefSeq Acc Id: NM_001351306   ⟹   NP_001338235
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,302,081 - 23,344,797 (-)NCBI
T2T-CHM13v2.01023,321,109 - 23,364,923 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365862   ⟹   NP_001352791
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,201,916 - 23,344,797 (-)NCBI
T2T-CHM13v2.01023,220,910 - 23,364,923 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001371909   ⟹   NP_001358838
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,202,696 - 23,344,797 (-)NCBI
T2T-CHM13v2.01023,221,690 - 23,364,923 (-)NCBI
Sequence:
RefSeq Acc Id: NM_153714   ⟹   NP_714925
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,316,587 - 23,344,797 (-)NCBI
GRCh371023,605,520 - 23,633,772 (-)RGD
Build 361023,645,526 - 23,673,778 (-)NCBI Archive
Celera1023,293,123 - 23,322,454 (-)RGD
HuRef1023,265,648 - 23,294,689 (-)ENTREZGENE
CHM1_11023,606,039 - 23,634,174 (-)NCBI
T2T-CHM13v2.01023,335,617 - 23,364,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519440   ⟹   XP_011517742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,250,612 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519441   ⟹   XP_011517743
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,251,438 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519442   ⟹   XP_011517744
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,264,545 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519443   ⟹   XP_011517745
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,201,916 - 23,291,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519445   ⟹   XP_011517747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,303,361 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519446   ⟹   XP_011517748
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,316,587 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017016031   ⟹   XP_016871520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,201,916 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047424968   ⟹   XP_047280924
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,201,916 - 23,344,078 (-)NCBI
RefSeq Acc Id: XM_047424970   ⟹   XP_047280926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,223,741 - 23,344,797 (-)NCBI
RefSeq Acc Id: XM_054365422   ⟹   XP_054221397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,220,910 - 23,364,204 (-)NCBI
RefSeq Acc Id: XM_054365423   ⟹   XP_054221398
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,242,747 - 23,364,923 (-)NCBI
RefSeq Acc Id: XM_054365424   ⟹   XP_054221399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,220,910 - 23,364,923 (-)NCBI
RefSeq Acc Id: XM_054365425   ⟹   XP_054221400
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,269,618 - 23,364,923 (-)NCBI
RefSeq Acc Id: XM_054365426   ⟹   XP_054221401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,270,444 - 23,364,923 (-)NCBI
RefSeq Acc Id: XM_054365427   ⟹   XP_054221402
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,281,514 - 23,364,923 (-)NCBI
RefSeq Acc Id: XM_054365428   ⟹   XP_054221403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,220,910 - 23,310,204 (-)NCBI
RefSeq Acc Id: XM_054365429   ⟹   XP_054221404
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,322,389 - 23,364,923 (-)NCBI
RefSeq Acc Id: XM_054365430   ⟹   XP_054221405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,335,616 - 23,364,923 (-)NCBI
RefSeq Acc Id: XR_008488190
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,301,051 - 23,364,923 (-)NCBI
RefSeq Acc Id: XR_008488191
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01023,329,014 - 23,364,923 (-)NCBI
RefSeq Acc Id: XR_930487
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,282,045 - 23,344,797 (-)NCBI
Sequence:
RefSeq Acc Id: XR_930488
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,309,986 - 23,344,797 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001338235 (Get FASTA)   NCBI Sequence Viewer  
  NP_001352791 (Get FASTA)   NCBI Sequence Viewer  
  NP_001358838 (Get FASTA)   NCBI Sequence Viewer  
  NP_714925 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517742 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517743 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517744 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517745 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517747 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517748 (Get FASTA)   NCBI Sequence Viewer  
  XP_016871520 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280924 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280926 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221397 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221398 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221399 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221400 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221401 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221402 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221403 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221404 (Get FASTA)   NCBI Sequence Viewer  
  XP_054221405 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH35732 (Get FASTA)   NCBI Sequence Viewer  
  EAW86129 (Get FASTA)   NCBI Sequence Viewer  
  EAW86130 (Get FASTA)   NCBI Sequence Viewer  
  EAW86131 (Get FASTA)   NCBI Sequence Viewer  
  EAW86132 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000321464.5
  ENSP00000365683.1
  ENSP00000490237
  ENSP00000490237.1
  ENSP00000490528
  ENSP00000490528.2
  ENSP00000497121
  ENSP00000497121.1
  ENSP00000501139
  ENSP00000501139.1
GenBank Protein Q8IYJ2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_714925   ⟸   NM_153714
- Peptide Label: isoform 1
- UniProtKB: A0A6E1W0W4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011517745   ⟸   XM_011519443
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011517742   ⟸   XM_011519440
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011517743   ⟸   XM_011519441
- Peptide Label: isoform X5
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011517744   ⟸   XM_011519442
- Peptide Label: isoform X6
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011517747   ⟸   XM_011519445
- Peptide Label: isoform X8
- UniProtKB: A0A6E1W0W4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011517748   ⟸   XM_011519446
- Peptide Label: isoform X9
- UniProtKB: A0A6E1W0W4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016871520   ⟸   XM_017016031
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001338235   ⟸   NM_001351306
- Peptide Label: isoform 2
- UniProtKB: A0A3B3IRX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001352791   ⟸   NM_001365862
- Peptide Label: isoform 3 precursor
- UniProtKB: Q8IYJ2 (UniProtKB/Swiss-Prot),   Q5QP74 (UniProtKB/Swiss-Prot),   A8MUP9 (UniProtKB/Swiss-Prot),   Q5SWD4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001358838   ⟸   NM_001371909
- Peptide Label: isoform 4
- UniProtKB: A0A6E2AE84 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000501139   ⟸   ENST00000673651
RefSeq Acc Id: ENSP00000497121   ⟸   ENST00000649478
RefSeq Acc Id: ENSP00000490528   ⟸   ENST00000636213
RefSeq Acc Id: ENSP00000321464   ⟸   ENST00000323327
RefSeq Acc Id: ENSP00000490237   ⟸   ENST00000376501
RefSeq Acc Id: ENSP00000365683   ⟸   ENST00000376500
RefSeq Acc Id: XP_047280924   ⟸   XM_047424968
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047280926   ⟸   XM_047424970
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054221399   ⟸   XM_054365424
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054221397   ⟸   XM_054365422
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054221403   ⟸   XM_054365428
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054221398   ⟸   XM_054365423
- Peptide Label: isoform X2
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054221400   ⟸   XM_054365425
- Peptide Label: isoform X4
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054221401   ⟸   XM_054365426
- Peptide Label: isoform X5
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054221402   ⟸   XM_054365427
- Peptide Label: isoform X6
- UniProtKB: A0A1B0GUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054221404   ⟸   XM_054365429
- Peptide Label: isoform X8
- UniProtKB: A0A6E1W0W4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054221405   ⟸   XM_054365430
- Peptide Label: isoform X9
- UniProtKB: A0A6E1W0W4 (UniProtKB/TrEMBL)
Protein Domains
DUF4709   DUF4724

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IYJ2-F1-model_v2 AlphaFold Q8IYJ2 1-551 view protein structure

Promoters
RGD ID:7217183
Promoter ID:EPDNEW_H14337
Type:initiation region
Name:C10orf67_1
Description:chromosome 10 open reading frame 67
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381023,344,797 - 23,344,857EPDNEW
RGD ID:6787625
Promoter ID:HG_KWN:8864
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   Lymphoblastoid
Transcripts:ENST00000376500
Position:
Human AssemblyChrPosition (strand)Source
Build 361023,672,876 - 23,673,482 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:28716 AgrOrtholog
COSMIC C10orf67 COSMIC
Ensembl Genes ENSG00000179133 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000323327.5 UniProtKB/TrEMBL
  ENST00000376500.5 UniProtKB/TrEMBL
  ENST00000376501 ENTREZGENE
  ENST00000376501.7 UniProtKB/TrEMBL
  ENST00000636213 ENTREZGENE
  ENST00000636213.3 UniProtKB/TrEMBL
  ENST00000649478 ENTREZGENE
  ENST00000649478.1 UniProtKB/TrEMBL
  ENST00000673651 ENTREZGENE
  ENST00000673651.1 UniProtKB/Swiss-Prot
GTEx ENSG00000179133 GTEx
HGNC ID HGNC:28716 ENTREZGENE
Human Proteome Map C10orf67 Human Proteome Map
InterPro C10orf67-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4709 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4724 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:256815 UniProtKB/Swiss-Prot
NCBI Gene 256815 ENTREZGENE
PANTHER PTHR22382 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIKEN CDNA 4921504E06 GENE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4709 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4724 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134915530 PharmGKB
UniProt A0A1B0GUT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A3B3IRX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A6E1W0W4 ENTREZGENE, UniProtKB/TrEMBL
  A0A6E2AE84 ENTREZGENE, UniProtKB/TrEMBL
  A8MUP9 ENTREZGENE
  CJ067_HUMAN UniProtKB/Swiss-Prot
  Q5QP74 ENTREZGENE
  Q5SWD4 ENTREZGENE
  Q5SXQ8_HUMAN UniProtKB/TrEMBL
  Q8IYJ2 ENTREZGENE
UniProt Secondary A8MUP9 UniProtKB/Swiss-Prot
  Q5QP74 UniProtKB/Swiss-Prot
  Q5SWD4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 C10orf67  chromosome 10 open reading frame 67  LINC01552  long intergenic non-protein coding RNA 1552  Data merged from RGD:1351499 737654 PROVISIONAL
2014-10-07 LINC01552  long intergenic non-protein coding RNA 1552  C10orf115  chromosome 10 open reading frame 115  Symbol and/or name change 5135510 APPROVED