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Gene: Slc38a8 (solute carrier family 38, member 8) Mus musculus

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Symbol:

Slc38a8

Name:

solute carrier family 38, member 8

RGD ID:

1618141

MGI Page

MGI

Description:

Predicted to enable L-amino acid transmembrane transporter activity. Acts upstream of or within several processes, including aspartate metabolic process; nervous system development; and retinal pigment epithelium development. Predicted to be located in axon and cell cortex. Predicted to be active in membrane. Used to study foveal hypoplasia 2. Human ortholog(s) of this gene implicated in foveal hypoplasia 2. Orthologous to human SLC38A8 (solute carrier family 38 member 8).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

amino acid transporter SLC38A8; Gm587; MGC113805; putative sodium-coupled neutral amino acid transporter 8; solute carrier family 38 member 8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC38A8 (solute carrier family 38 member 8)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Slc38a8 (solute carrier family 38, member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc38a8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC38A8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC38A8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc38a8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC38A8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC38A8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc38a8 (solute carrier family 38 member 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Slc38a8 (solute carrier family 38, member 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC38A8 (solute carrier family 38 member 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc38a8b (solute carrier family 38 member 8b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	slc38a8a (solute carrier family 38 member 8a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	AVT7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	AVT5	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	AVT6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	slc38a8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	120,206,313 - 120,228,503 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	120,206,341 - 120,228,437 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	119,479,574 - 119,501,698 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	119,479,602 - 119,501,698 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	122,003,502 - 122,025,598 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	122,365,579 - 122,387,675 (-)	NCBI		MGSCv36	mm8
Celera	8	123,696,930 - 123,719,116 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	67.8	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	Foveal Hypoplasia		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Foveal hypoplasia	ClinVar	PMID:24045842 more ...
Slc38a8	Mouse	foveal hypoplasia 2		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:16199547 more ...
Slc38a8	Mouse	genetic disease		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:16707527 more ...
Slc38a8	Mouse	Leber congenital amaurosis		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Leber congenital amaurosis	ClinVar	PMID:17576681 more ...
Slc38a8	Mouse	Malonic Aciduria		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deficiency of malonyl-CoA decarboxylase	ClinVar	PMID:12955715 more ...
Slc38a8	Mouse	persistent fetal circulation syndrome		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital alveolar capillary dysplasia	ClinVar
Slc38a8	Mouse	primary ciliary dyskinesia		ISO	SLC38A8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	foveal hypoplasia 2		ISO	SLC38A8 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	foveal hypoplasia 2		IAGP		13592920	OMIM:609218	MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	foveal hypoplasia 2		ISO	SLC38A8 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	17beta-estradiol	decreases expression	ISO	SLC38A8 (Homo sapiens)	6480464	Estradiol results in decreased expression of SLC38A8 mRNA	CTD	PMID:31614463
Slc38a8	Mouse	2-palmitoylglycerol	increases expression	ISO	SLC38A8 (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of SLC38A8 mRNA	CTD	PMID:37199045
Slc38a8	Mouse	Aflatoxin B2 alpha	decreases methylation	ISO	SLC38A8 (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of SLC38A8 intron	CTD	PMID:30157460
Slc38a8	Mouse	arsane	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of SLC38A8 mRNA	CTD	PMID:39836092
Slc38a8	Mouse	arsenic atom	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of SLC38A8 mRNA	CTD	PMID:39836092
Slc38a8	Mouse	benzo[a]pyrene	affects methylation	ISO	SLC38A8 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of SLC38A8 promoter	CTD	PMID:27901495
Slc38a8	Mouse	benzo[e]pyrene	decreases methylation	ISO	SLC38A8 (Homo sapiens)	6480464	benzo(e)pyrene results in decreased methylation of SLC38A8 intron	CTD	PMID:30157460
Slc38a8	Mouse	bisphenol A	decreases expression	ISO	Slc38a8 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of SLC38A8 mRNA	CTD	PMID:25181051
Slc38a8	Mouse	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of SLC38A8 mRNA	CTD	PMID:37019170
Slc38a8	Mouse	copper atom	increases expression	ISO	Slc38a8 (Rattus norvegicus)	6480464	Copper deficiency results in increased expression of SLC38A8 mRNA	CTD	PMID:26033743
Slc38a8	Mouse	copper atom	multiple interactions	ISO	Slc38a8 (Rattus norvegicus)	6480464	[Copper co-treated with Dietary Sucrose] results in increased expression of SLC38A8 mRNA	CTD	PMID:26033743
Slc38a8	Mouse	copper(0)	multiple interactions	ISO	Slc38a8 (Rattus norvegicus)	6480464	[Copper co-treated with Dietary Sucrose] results in increased expression of SLC38A8 mRNA	CTD	PMID:26033743
Slc38a8	Mouse	copper(0)	increases expression	ISO	Slc38a8 (Rattus norvegicus)	6480464	Copper deficiency results in increased expression of SLC38A8 mRNA	CTD	PMID:26033743
Slc38a8	Mouse	dimethylarsinic acid	multiple interactions	EXP		6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of SLC38A8 mRNA	CTD	PMID:34876320
Slc38a8	Mouse	doxorubicin	decreases expression	ISO	SLC38A8 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of SLC38A8 mRNA	CTD	PMID:29803840
Slc38a8	Mouse	folic acid	decreases expression	EXP		6480464	Folic Acid results in decreased expression of SLC38A8 mRNA	CTD	PMID:25629700
Slc38a8	Mouse	manganese atom	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of SLC38A8 mRNA and [manganese chloride results in increased abundance of Manganese] which results in decreased expression of SLC38A8 mRNA	CTD	PMID:39836092
Slc38a8	Mouse	manganese(0)	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of SLC38A8 mRNA and [manganese chloride results in increased abundance of Manganese] which results in decreased expression of SLC38A8 mRNA	CTD	PMID:39836092
Slc38a8	Mouse	manganese(II) chloride	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of SLC38A8 mRNA and [manganese chloride results in increased abundance of Manganese] which results in decreased expression of SLC38A8 mRNA	CTD	PMID:39836092
Slc38a8	Mouse	methapyrilene	decreases methylation	ISO	SLC38A8 (Homo sapiens)	6480464	Methapyrilene results in decreased methylation of SLC38A8 intron	CTD	PMID:30157460
Slc38a8	Mouse	methylarsonic acid	multiple interactions	EXP		6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of SLC38A8 mRNA	CTD	PMID:34876320
Slc38a8	Mouse	resveratrol	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of SLC38A8 mRNA	CTD	PMID:23557933
Slc38a8	Mouse	sodium arsenate	multiple interactions	EXP		6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of SLC38A8 mRNA	CTD	PMID:34876320
Slc38a8	Mouse	sodium arsenite	multiple interactions	ISO	SLC38A8 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of SLC38A8 mRNA	CTD	PMID:39836092
Slc38a8	Mouse	sodium arsenite	multiple interactions	EXP		6480464	[sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results in decreased expression of SLC38A8 mRNA	CTD	PMID:34876320
Slc38a8	Mouse	titanium dioxide	decreases expression	EXP		6480464	titanium dioxide results in decreased expression of SLC38A8 mRNA	CTD	PMID:35295148
Slc38a8	Mouse	valproic acid	increases methylation	ISO	SLC38A8 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of SLC38A8 gene	CTD	PMID:29154799
Slc38a8	Mouse	valproic acid	increases expression	ISO	Slc38a8 (Rattus norvegicus)	6480464	Valproic Acid results in increased expression of SLC38A8 mRNA	CTD	PMID:35594946

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	amino acid transmembrane transport	involved_in	IBA	PANTHER:PTN000535793 more ...	2290270		GO_Central	GO_REF:0000033
Slc38a8	Mouse	amino acid transport	involved_in	IEA	UniProtKB-KW:KW-0029	2290270		UniProt	GO_REF:0000043
Slc38a8	Mouse	aspartate metabolic process	acts_upstream_of_or_within	IMP		2290270	PMID:36735752	MGI	PMID:36735752
Slc38a8	Mouse	neuron projection development	acts_upstream_of_or_within	IMP		2290270	PMID:37862028	MGI	PMID:37862028
Slc38a8	Mouse	optic nerve development	acts_upstream_of_or_within	IMP		2290270	PMID:37862028	MGI	PMID:37862028
Slc38a8	Mouse	response to virus	acts_upstream_of_or_within	IMP		2290270	PMID:36735752	MGI	PMID:36735752
Slc38a8	Mouse	retina development in camera-type eye	acts_upstream_of_or_within	IMP		2290270	PMID:37862028	MGI	PMID:37862028
Slc38a8	Mouse	retinal pigment epithelium development	acts_upstream_of_or_within	IMP		2290270	PMID:37862028	MGI	PMID:37862028
Slc38a8	Mouse	viral genome replication	acts_upstream_of_or_within	IMP		2290270	PMID:36735752	MGI	PMID:36735752
Slc38a8	Mouse	visual perception	acts_upstream_of_or_within	IMP		2290270	PMID:37862028	MGI	PMID:37862028

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	axon	located_in	IEA	UniProtKB-SubCell:SL-0279	2290270		UniProt	GO_REF:0000044
Slc38a8	Mouse	cell cortex	located_in	IEA	UniProtKB-SubCell:SL-0138	2290270		UniProt	GO_REF:0000044
Slc38a8	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015
Slc38a8	Mouse	membrane	is_active_in	IBA	PANTHER:PTN000535793 more ...	2290270		GO_Central	GO_REF:0000033
Slc38a8	Mouse	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	L-amino acid transmembrane transporter activity	enables	IBA	PANTHER:PTN000535793 more ...	2290270		GO_Central	GO_REF:0000033

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc38a8	Mouse	abnormal choroid pigmentation		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	abnormal innervation		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	abnormal iris pigmentation		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	abnormal lateral geniculate nucleus morphology		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	abnormal retina pigment epithelium morphology		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	decreased a-wave amplitude		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	decreased aspartic acid level		IAGP		5509061		MGI	PMID:36735752
Slc38a8	Mouse	decreased b-wave amplitude		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	decreased circulating aspartate transaminase level		IAGP		5509061		MGI	PMID:36735752
Slc38a8	Mouse	decreased susceptibility to viral infection		IAGP		5509061		MGI	PMID:36735752
Slc38a8	Mouse	decreased susceptibility to viral infection induced morbidity/mortality		IAGP		5509061		MGI	PMID:36735752
Slc38a8	Mouse	decreased visual acuity		IAGP		5509061		MGI	PMID:37862028
Slc38a8	Mouse	hyperactivity		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:14610273	PMID:14681479	PMID:18799693	PMID:21873635	PMID:36735752	PMID:37862028	PMID:38355793	PMID:39956648

Slc38a8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	120,206,313 - 120,228,503 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	120,206,341 - 120,228,437 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	119,479,574 - 119,501,698 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	119,479,602 - 119,501,698 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	122,003,502 - 122,025,598 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	122,365,579 - 122,387,675 (-)	NCBI		MGSCv36	mm8
Celera	8	123,696,930 - 123,719,116 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	67.8	NCBI

SLC38A8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	84,009,667 - 84,043,372 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	84,009,667 - 84,042,795 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	84,043,272 - 84,076,400 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	82,600,890 - 82,633,263 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	68,345,794 - 68,378,119 (-)	NCBI		Celera
Cytogenetic Map	16	q23.3	NCBI
HuRef	16	69,797,338 - 69,829,598 (-)	NCBI		HuRef
CHM1_1	16	85,454,749 - 85,487,120 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	90,075,718 - 90,109,442 (-)	NCBI		T2T-CHM13v2.0

Slc38a8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	64,432,524 - 64,468,852 (-)	NCBI		GRCr8
mRatBN7.2	19	47,522,781 - 47,561,443 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	47,525,301 - 47,554,726 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	54,329,461 - 54,349,105 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	55,010,294 - 55,029,882 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	57,223,651 - 57,243,307 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	52,110,517 - 52,142,500 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	52,119,992 - 52,139,633 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	62,868,486 - 62,889,215 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	49,724,607 - 49,744,249 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	46,794,134 - 46,813,788 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Slc38a8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955564	230,610 - 253,523 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955564	233,796 - 252,565 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC38A8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	93,757,729 - 93,791,473 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	99,674,942 - 99,708,625 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	64,676,787 - 64,709,083 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	84,020,379 - 84,053,359 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	84,020,458 - 84,053,458 (-)	Ensembl	panpan1.1		panPan2

SLC38A8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	68,289,864 - 68,308,381 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	68,289,485 - 68,308,340 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	68,301,246 - 68,322,415 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	68,585,185 - 68,606,544 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	68,587,834 - 68,606,543 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	68,532,930 - 68,554,254 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	68,369,496 - 68,390,660 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	68,785,243 - 68,806,413 (+)	NCBI		UU_Cfam_GSD_1.0

Slc38a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	27,995,807 - 28,028,525 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	3,757,130 - 3,774,098 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	3,757,107 - 3,778,939 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC38A8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	4,564,533 - 4,594,520 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	4,563,967 - 4,593,667 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC38A8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	69,421,171 - 69,455,073 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666047	6,305,409 - 6,353,493 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc38a8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	3,529,507 - 3,547,445 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	3,528,713 - 3,554,017 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Slc38a8
2187 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	973
Count of miRNA genes:	604
Interacting mature miRNAs:	709
Transcripts:	ENSMUST00000036748, ENSMUST00000125594, ENSMUST00000132838, ENSMUST00000133821, ENSMUST00000138061
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357494	Obsty2_m	obesity 2 (mouse)			Not determined		8	96245241	129745061	Mouse
4141435	Fbtq3_m	femoral bone trait QTL 3 (mouse)			Not determined		8	100965309	130127694	Mouse
12904960	Gmmq6_m	gastrocnemius muscle mass QTL 6 (mouse)					8	111481497	130127694	Mouse
11252141	Fdr2_m	fat response to dietary restriction 2 (mouse)					8	98390634	130127694	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
1302105	Im1_m	Immunoregulatory 1 (mouse)			Not determined		8	99828531	130127694	Mouse
12880431	Fgf23lq2_m	FGF23 serum level QTL 2 (mouse)					8	97626632	130127694	Mouse
1301080	Sluc9_m	susceptibility to lung cancer 9 (mouse)			Not determined		8	99828531	130127694	Mouse
10412274	Leci1_m	leukocyte endothelial cell interactions 1 (mouse)			Not determined		8	110415083	130127694	Mouse
12904938	Edlmmq7_m	extensor digitorum longus muscle mass QTL 7 (mouse)					8	111481497	130127694	Mouse
10412273	Fcd1_m	functional capillary density 1 (mouse)			Not determined		8	110415083	130127694	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
14746994	Manh65_m	mandible shape 65 (mouse)					8	106489629	130127694	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4141546	Mrdq3_m	modifier of retinal degeneration QTL 3 (mouse)			Not determined			114439420	126055880	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
1301316	Dntcs1_m	dental caries susceptibility 1 (mouse)			Not determined		8	103443553	127781786	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301481	Lith11_m	lithogenic gene 11 (mouse)			Not determined		8	98563635	130127694	Mouse
11532692	Sluc38a_m	susceptibility to lung cancer 38a (mouse)					8	105033977	130127694	Mouse
11532691	Sluc38_m	susceptibility to lung cancer 38 (mouse)					8	105033977	130127694	Mouse

Slc38a8

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	E1	UniSTS
cM Map	8	67.8	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001009950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC140672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC166781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000036748 ⟹ ENSMUSP00000038438

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	120,206,341 - 120,228,437 (-)	Ensembl
GRCm38.p6 Ensembl	8	119,479,602 - 119,501,698 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000125594

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	120,212,838 - 120,221,634 (-)	Ensembl
GRCm38.p6 Ensembl	8	119,486,099 - 119,494,895 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000132838

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	120,212,260 - 120,223,726 (-)	Ensembl
GRCm38.p6 Ensembl	8	119,485,521 - 119,496,987 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000133821 ⟹ ENSMUSP00000123094

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	120,222,824 - 120,228,434 (-)	Ensembl
GRCm38.p6 Ensembl	8	119,496,085 - 119,501,695 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000138061 ⟹ ENSMUSP00000119987

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	120,220,939 - 120,228,033 (-)	Ensembl
GRCm38.p6 Ensembl	8	119,494,200 - 119,501,294 (-)	Ensembl

RefSeq Acc Id:

NM_001009950 ⟹ NP_001009950

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	120,206,336 - 120,228,503 (-)	NCBI
GRCm38	8	119,479,602 - 119,501,698 (-)	NCBI
MGSCv37	8	122,003,502 - 122,025,598 (-)	RGD
Celera	8	123,696,930 - 123,719,116 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

AACCCAACAAATGCCCTTAGGGCCCCCTAATGAAAGTCTCAGGAGCCCAGACCTGTGGAGGAAGACTCTACCTCCACCTGCCTCTCATGACTGCAACAGTGTGGCCGAAGCACTAAGAGGAAGCCTAA
ATTTGAATCTGCTGGCCCAGGGCCTGTGGGACACCTTACTGGGTTTGCCATGGAAGGGCAGCCCAGAGGGAGCAGAGGCCCTCTGGAGAAGCCCCTCCCTGCTGCCACCCATCCCACTCTGTCCTCAC
TGGGCGCCGTGTTCATCCTCTTGAAGTCCGCTCTGGGCGCCGGCCTGCTCAACTTCCCCTGGGCCTTCTACAAGGCAGGAGGCATGCTGCCCACCTTCCTGGTGGCCCTGGTATCTTTGGTCTTCCTG
ATCAGCGGCCTGGTCATCCTGGGCTACGCAGCATCTGTCAGTGGCCAGACCACCTACCAGGGTGTGGTCCGGGAGCTATGTGGCCCCGCCATGGGGAAGCTGTGTGAGATCTGCTTCCTGACCAACCT
GCTCATGATCTCTGTGGCTTTCCTCAGAGTGATCGGGGACCAGCTGGAGAAGTTGTGTGACTCCCTCCTGCCTGACGCCCCACAGCCTTGGTATGCAGCCCAGAACTTCACCCTGCCCCTGATCTCCA
TGCTGGTCATCTTTCCCCTGTCAGCACTTCGGGAAATTGCCCTCCAGAAGTACACCAGCATCCTAGGTACTCTGGCTGCCTGCTACCTTGCTCTGGTCATCACGGTGCAATACTACCTGTGGCCCCAG
GGCCTCATACGCCAGCCCGGTCCTTTGCTGAGCCCGTCTCCCTGGACCTCTGTGTTTAGCGTGTTCCCTACCATCTGCTTTGGATTCCAGTGTCATGAGGCCGCCGTCTCCATCTACTGCAGCATGTG
GAACCAGAGCCTCTCCCACTGGACCCTGGTTTCTGTGCTGTCCTTGCTGGCCTGCTGCCTTGTCTACACGCTGACAGGGGTTTATGGCTTCCTGACCTTCGGGCCTGAAGTTTCTGCTGATATCTTAA
TGTCCTACCCAGGCAATGACACAGCCATCATCGTAGCACGCGTTCTCTTTGCGGTCTCCATTGTGACTGTCTACCCCATTGTGCTATTCCTGGGGAGGTCTGTGATGCAGGACTTTTGGAAAAAGAGC
TACTGGGCCACACGGGGGCCTCCAGTGCTGGCTGACCCCTCAGGGCCTTGGGTTCGGCTGCCTCTGACCTTCCTGTGGGTGGTGGTGACGCTCACCATGGCTCTGTTCCTGCCGGACCTCAGCGAGAT
CATTAGCATCATTGGTGGTGTCAGTTCCTTCTTCATCTTCATCTTCCCAGGTTTGTGTCTCATCTGTGCTGTGGACACGGAACCCATGGGACCAAGAGTCAAGTGCTGCCTGGAGGCCTGGGGCATCC
TCTCTGTGCTGGTGGGCACTTTCATCTTTGGGCAGAGCACAGCGGTGGCCATGGTGGAGCTGCTCTGAGAGGCCTCTGGGCTGACACAATCACTCCTGCATCTGGCCTGAAGACCCCTATAAGGTTCT
TGCTGTCACAAAGGTGCTGCCCTGTCTATTGAGCACTGCTTCTCCTATGGCTCACGGGACCCCGGTGAGGAAGGACGGCTGTGACAAGTTCCTGCCACGTGGTGACTCGGGACAGTAGAAGCCCATGC
TACCGAAAGCTGGAGTGTGGGCTAGCGAGTGGTGGGTCATGGTGCTTCAGAAGGTTCTGGAACGTTCTTCCCACTGTCCACTCTGGTGGTTGCAGGAATTCCTTAGTGTCCCTGGCTTGTAGATGTAT
CACTGTAGTCACAGGGTGGACACCTATCCTGTGTGTCCTTTTCCAAGCGGAATGCCCATCTCAAGTTAGTGAGCACTTGTCTGCACCCGCTATGTGTAAAGACATGTGACTTAGTTACTGTTCTGTTG
CTGTGAAGAGACACATGATCAAGGAACTCAGAGGAGTTCCTTGGGAGGTTAGCGTTCATGAGCATCATGGCAGGGAGCATGGTGGCAGGCAGGCAGGCAGGCATGATGCTGCAGCAGTAGCTGAGCCA
TTACATTCTCATGGGCGAGCACAAGGCAGAGAGCACACACTGGGAACGATGTGGACCCACTCCCAGTGACAAGCCTCCTTCAACAAGACCACACCTCCTAATCCTTCCCAAACAGTTGAGACCAACCA
TTCATACATGTGAACCTGTGGGAGCCATTTTCATTCAAACCACCGGATTCCACTCCCTGGCTCCCATGGAGTGCAAAGTGCAAACTGCATTCAGTCCAGCTTCAAAAGTCTCCATTGTTGGGGTCTGA
CTTAAGGTTACGTGAGGATAAAATGCATTCGAGAGCTAAGTGTCAGAGCAGCTAACGTTGCTGTTTCTCAGGAAGTAAATTTGGAATGCCCACAAGTGTGGGAGGGACACAGGAACCCTTGTGACCTT
CCTCGGTTTCTAGAAAACAGTCAACAGCATTCTCATACCTCAGCCATTTTTTTTTCTGAAGACAAATAATATTGTCATGCTTCATATAAACCTGAACGTGCCAGGCTGTGAGGTGGGCATCTCTGCAA
CTGCCAACTCCTAACTCTGCTATCGAAGGAGCTACAATAATAAAATGAGCCTCGTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_011248368 ⟹ XP_011246670

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	120,206,313 - 120,227,239 (-)	NCBI
GRCm38	8	119,479,574 - 119,500,500 (-)	NCBI

Sequence:

show sequence

TCCCTGTGGGCCACTCATGTACCCTGGCTGCCAAGAGTGTCTGGGCAAGGCAGACAGGAAAGAGAGCACAGGGGCCTGTTTGTGGGATCTGGGGTGAATTGTGGGTTCGGGGCAGTAGTCTAACTCAA
TGTATGTGTGAAAATTGTTCATAATAAATGATGGAGAGAGCCCTGGAAGACCCAATAAAGAGCCCCACCCCCACAAACCACCAACCCCGCCCTTCTCAGAGACAACTCACCCAGAGCCTGCAACTGAG
TGCACCAGACCCCAGCACCCATGAGAGGTATCTTTGGTCTTCCTGATCAGCGGCCTGGTCATCCTGGGCTACGCAGCATCTGTCAGTGGCCAGACCACCTACCAGGGTGTGGTCCGGGAGCTATGTGG
CCCCGCCATGGGGAAGCTGTGTGAGATCTGCTTCCTGACCAACCTGCTCATGATCTCTGTGGCTTTCCTCAGAGTGATCGGGGACCAGCTGGAGAAGTTGTGTGACTCCCTCCTGCCTGACGCCCCAC
AGCCTTGGTATGCAGCCCAGAACTTCACCCTGCCCCTGATCTCCATGCTGGTCATCTTTCCCCTGTCAGCACTTCGGGAAATTGCCCTCCAGAAGTACACCAGCATCCTAGGTACTCTGGCTGCCTGC
TACCTTGCTCTGGTCATCACGGTGCAATACTACCTGTGGCCCCAGGGCCTCATACGCCAGCCCGGTCCTTTGCTGAGCCCGTCTCCCTGGACCTCTGTGTTTAGCGTGTTCCCTACCATCTGCTTTGG
ATTCCAGTGTCATGAGGCCGCCGTCTCCATCTACTGCAGCATGTGGAACCAGAGCCTCTCCCACTGGACCCTGGTTTCTGTGCTGTCCTTGCTGGCCTGCTGCCTTGTCTACACGCTGACAGGGGTTT
ATGGCTTCCTGACCTTCGGGCCTGAAGTTTCTGCTGATATCTTAATGTCCTACCCAGGCAATGACACAGCCATCATCGTAGCACGCGTTCTCTTTGCGGTCTCCATTGTGACTGTCTACCCCATTGTG
CTATTCCTGGGGAGGTCTGTGATGCAGGACTTTTGGAAAAAGAGCTACTGGGCCACACGGGGGCCTCCAGTGCTGGCTGACCCCTCAGGGCCTTGGGTTCGGCTGCCTCTGACCTTCCTGTGGGTGGT
GGTGACGCTCACCATGGCTCTGTTCCTGCCGGACCTCAGCGAGATCATTAGCATCATTGGTGGTGTCAGTTCCTTCTTCATCTTCATCTTCCCAGGTTTGTGTCTCATCTGTGCTGTGGACACGGAAC
CCATGGGACCAAGAGTCAAGTGCTGCCTGGAGGCCTGGGGCATCCTCTCTGTGCTGGTGGGCACTTTCATCTTTGGGCAGAGCACAGCGGTGGCCATGGTGGAGCTGCTCTGAGAGGCCTCTGGGCTG
ACACAATCACTCCTGCATCTGGCCTGAAGACCCCTATAAGGTTCTTGCTGTCACAAAGGTGCTGCCCTGTCTATTGAGCACTGCTTCTCCTATGGCTCACGGGACCCCGGTGAGGAAGGACGGCTGTG
ACAAGTTCCTGCCACGTGGTGACTCGGGACAGTAGAAGCCCATGCTACCGAAAGCTGGAGTGTGGGCTAGCGAGTGGTGGGTCATGGTGCTTCAGAAGGTTCTGGAACGTTCTTCCCACTGTCCACTC
TGGTGGTTGCAGGAATTCCTTAGTGTCCCTGGCTTGTAGATGTATCACTGTAGTCACAGGGTGGACACCTATCCTGTGTGTCCTTTTCCAAGCGGAATGCCCATCTCAAGTTAGTGAGCACTTGTCTG
CACCCGCTATGTGTAAAGACATGTGACTTAGTTACTGTTCTGTTGCTGTGAAGAGACACATGATCAAGGAACTCAGAGGAGTTCCTTGGGAGGTTAGCGTTCATGAGCATCATGGCAGGGAGCATGGT
GGCAGGCAGGCAGGCAGGCATGATGCTGCAGCAGTAGCTGAGCCATTACATTCTCATGGGCGAGCACAAGGCAGAGAGCACACACTGGGAACGATGTGGACCCACTCCCAGTGACAAGCCTCCTTCAA
CAAGACCACACCTCCTAATCCTTCCCAAACAGTTGAGACCAACCATTCATACATGTGAACCTGTGGGAGCCATTTTCATTCAAACCACCGGATTCCACTCCCTGGCTCCCATGGAGTGCAAAGTGCAA
ACTGCATTCAGTCCAGCTTCAAAAGTCTCCATTGTTGGGGTCTGACTTAAGGTTACGTGAGGATAAAATGCATTCGAGAGCTAAGTGTCAGAGCAGCTAACGTTGCTGTTTCTCAGGAAGTAAATTTG
GAATGCCCACAAGTGTGGGAGGGACACAGGAACCCTTGTGACCTTCCTCGGTTTCTAGAAAACAGTCAACAGCATTCTCATACCTCAGCCATTTTTTTTTCTGAAGACAAATAATATTGTCATGCTTC
ATATAAACCTGAACGTGCCAGGCTGTGAGGTGGGCATCTCTGCAACTGCCAACTCCTAACTCTGCTATCGAAGGAGCTACAATAATAAAATGAGCCTCGTTGTGCAAATCGCACTGGGCTGCCTTGAG
TCCCCCTG

hide sequence


Protein RefSeqs	NP_001009950	(Get FASTA)	NCBI Sequence Viewer
	XP_011246670	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89013	(Get FASTA)	NCBI Sequence Viewer
	EDL11599	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000038438
	ENSMUSP00000038438.9
GenBank Protein	Q5HZH7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001009950 ⟸ NM_001009950

- UniProtKB:

Q5HZH7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEGQPRGSRGPLEKPLPAATHPTLSSLGAVFILLKSALGAGLLNFPWAFYKAGGMLPTFLVALVSLVFLISGLVILGYAASVSGQTTYQGVVRELCGPAMGKLCEICFLTNLLMISVAFLRVIGDQLE
KLCDSLLPDAPQPWYAAQNFTLPLISMLVIFPLSALREIALQKYTSILGTLAACYLALVITVQYYLWPQGLIRQPGPLLSPSPWTSVFSVFPTICFGFQCHEAAVSIYCSMWNQSLSHWTLVSVLSLL
ACCLVYTLTGVYGFLTFGPEVSADILMSYPGNDTAIIVARVLFAVSIVTVYPIVLFLGRSVMQDFWKKSYWATRGPPVLADPSGPWVRLPLTFLWVVVTLTMALFLPDLSEIISIIGGVSSFFIFIFP
GLCLICAVDTEPMGPRVKCCLEAWGILSVLVGTFIFGQSTAVAMVELL

hide sequence

RefSeq Acc Id:

XP_011246670 ⟸ XM_011248368

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGKLCEICFLTNLLMISVAFLRVIGDQLEKLCDSLLPDAPQPWYAAQNFTLPLISMLVIFPLSA
LREIALQKYTSILGTLAACYLALVITVQYYLWPQGLIRQPGPLLSPSPWTSVFSVFPTICFGFQCHEAAVSIYCSMWNQSLSHWTLVSVLSLLACCLVYTLTGVYGFLTFGPEVSADILMSYPGNDTA
IIVARVLFAVSIVTVYPIVLFLGRSVMQDFWKKSYWATRGPPVLADPSGPWVRLPLTFLWVVVTLTMALFLPDLSEIISIIGGVSSFFIFIFPGLCLICAVDTEPMGPRVKCCLEAWGILSVLVGTFI
FGQSTAVAMVELL

hide sequence

Ensembl Acc Id:

ENSMUSP00000119987 ⟸ ENSMUST00000138061

Ensembl Acc Id:

ENSMUSP00000038438 ⟸ ENSMUST00000036748

Ensembl Acc Id:

ENSMUSP00000123094 ⟸ ENSMUST00000133821

Protein Domains

Amino acid transporter transmembrane

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5HZH7-F1-model_v2	AlphaFold	Q5HZH7	1-432	view protein structure

RGD ID:

8668415

Promoter ID:

EPDNEW_M12238

Type:

initiation region

Name:

Slc38a8_1

Description:

Mus musculus solute carrier family 38, member 8 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	119,501,764 - 119,501,824	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000034224	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000036748	ENTREZGENE
	ENSMUST00000036748.15	UniProtKB/Swiss-Prot
Gene3D-CATH	Amino acid/polyamine transporter I	UniProtKB/Swiss-Prot
InterPro	AA_transpt_TM	UniProtKB/Swiss-Prot
KEGG Report	mmu:234788	UniProtKB/Swiss-Prot
MGD	MGI:2685433	ENTREZGENE
NCBI Gene	234788	ENTREZGENE
PANTHER	AMINO ACID TRANSPORTER	UniProtKB/Swiss-Prot
	SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 8-RELATED	UniProtKB/Swiss-Prot
Pfam	Aa_trans	UniProtKB/Swiss-Prot
PhenoGen	Slc38a8	PhenoGen
UniProt	D3YUL2_MOUSE	UniProtKB/TrEMBL
	D3Z7F9_MOUSE	UniProtKB/TrEMBL
	Q5HZH7	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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