Sntg1 (syntrophin, gamma 1) - Rat Genome Database

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Gene: Sntg1 (syntrophin, gamma 1) Mus musculus
Analyze
Symbol: Sntg1
Name: syntrophin, gamma 1
RGD ID: 1617506
MGI Page MGI
Description: Predicted to enable actin binding activity and structural molecule activity. Predicted to be located in cytoplasm; cytoskeleton; and ruffle membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Orthologous to human SNTG1 (syntrophin gamma 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933426D16Rik; G1S; G1SYN; gamma-1-syntrophin; SY; SYN4; syntrophin-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3918,429,963 - 9,371,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl18,431,699 - 9,370,103 (-)EnsemblGRCm39 Ensembl
GRCm3818,359,739 - 9,301,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl18,361,475 - 9,299,878 (-)EnsemblGRCm38mm10GRCm38
MGSCv3718,352,742 - 9,289,811 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3618,352,595 - 9,284,452 (-)NCBIMGSCv36mm8
Celera18,319,644 - 9,265,611 (-)NCBICelera
Cytogenetic Map1A1- A2NCBI
cM Map12.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15761153   PMID:16141072   PMID:16141073   PMID:16857187   PMID:18468998   PMID:21267068   PMID:21677750  
PMID:21873635  


Genomics

Comparative Map Data
Sntg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3918,429,963 - 9,371,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl18,431,699 - 9,370,103 (-)EnsemblGRCm39 Ensembl
GRCm3818,359,739 - 9,301,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl18,361,475 - 9,299,878 (-)EnsemblGRCm38mm10GRCm38
MGSCv3718,352,742 - 9,289,811 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3618,352,595 - 9,284,452 (-)NCBIMGSCv36mm8
Celera18,319,644 - 9,265,611 (-)NCBICelera
Cytogenetic Map1A1- A2NCBI
cM Map12.08NCBI
SNTG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38849,909,796 - 50,796,692 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl849,909,789 - 50,796,692 (+)EnsemblGRCh38hg38GRCh38
GRCh37850,822,356 - 51,709,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36850,987,150 - 51,867,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 34850,987,149 - 51,867,980NCBI
Celera846,812,529 - 47,693,284 (+)NCBICelera
Cytogenetic Map8q11.21NCBI
HuRef846,289,537 - 47,171,268 (+)NCBIHuRef
CHM1_1850,876,886 - 51,757,725 (+)NCBICHM1_1
T2T-CHM13v2.0850,288,289 - 51,170,264 (+)NCBIT2T-CHM13v2.0
Sntg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,769,290 - 15,583,468 (+)NCBIGRCr8
mRatBN7.259,980,550 - 10,794,666 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,981,115 - 10,791,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx512,570,179 - 12,939,304 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0514,218,411 - 14,604,829 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0513,904,867 - 14,274,007 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0510,118,901 - 10,493,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl510,178,302 - 10,493,094 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0515,039,209 - 15,286,329 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4510,043,321 - 10,418,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera59,933,073 - 10,291,832 (+)NCBICelera
Cytogenetic Map5q11NCBI
Sntg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545410,174,380 - 10,439,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554549,698,609 - 10,439,874 (+)NCBIChiLan1.0ChiLan1.0
SNTG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2765,568,250 - 66,433,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1841,298,699 - 42,163,204 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0846,358,675 - 47,223,131 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1843,750,466 - 44,607,233 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl844,214,273 - 44,606,891 (+)Ensemblpanpan1.1panPan2
SNTG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1292,000,167 - 2,819,468 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl292,522,653 - 2,818,410 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha292,427,062 - 3,256,355 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0292,056,582 - 2,879,126 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl292,478,892 - 2,879,277 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1291,998,582 - 2,812,831 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0292,225,602 - 3,043,266 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0292,298,045 - 3,111,263 (+)NCBIUU_Cfam_GSD_1.0
Sntg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530376,816,902 - 77,613,904 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365902,003,351 - 2,562,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365902,006,927 - 2,803,088 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNTG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl478,527,519 - 78,981,003 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1478,527,486 - 78,982,116 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNTG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1845,981,435 - 46,858,135 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603995,199,087 - 96,108,935 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sntg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247354,758,511 - 5,063,007 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247354,757,825 - 5,647,328 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2336
Count of miRNA genes:785
Interacting mature miRNAs:1009
Transcripts:ENSMUST00000115484, ENSMUST00000115488, ENSMUST00000126083, ENSMUST00000132064, ENSMUST00000134075, ENSMUST00000135046, ENSMUST00000140295, ENSMUST00000140302, ENSMUST00000144593
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse

Markers in Region
27.MMHAP17FA6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3818,537,997 - 8,538,148UniSTSGRCm38
MGSCv3718,528,078 - 8,528,229UniSTSGRCm37
Celera18,507,247 - 8,507,398UniSTS
Cytogenetic Map1A1-A2UniSTS
Whitehead_YAC1 UniSTS
BB175276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3818,362,871 - 8,362,966UniSTSGRCm38
MGSCv3718,352,952 - 8,353,047UniSTSGRCm37
Celera18,319,854 - 8,319,949UniSTS
Cytogenetic Map1A1-A2UniSTS
Whitehead/MRC_RH187.69UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC114904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF367759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ254355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02008957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000115484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,433,407 - 8,540,744 (-)Ensembl
GRCm38.p6 Ensembl18,363,183 - 8,470,520 (-)Ensembl
Ensembl Acc Id: ENSMUST00000115488   ⟹   ENSMUSP00000111151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,433,699 - 8,874,167 (-)Ensembl
GRCm38.p6 Ensembl18,363,475 - 8,803,943 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl19,020,796 - 9,368,461 (-)Ensembl
GRCm38.p6 Ensembl18,950,572 - 9,298,236 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132064   ⟹   ENSMUSP00000122134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,431,699 - 9,368,798 (-)Ensembl
GRCm38.p6 Ensembl18,361,475 - 9,298,573 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,851,755 - 9,369,734 (-)Ensembl
GRCm38.p6 Ensembl18,781,531 - 9,299,509 (-)Ensembl
Ensembl Acc Id: ENSMUST00000135046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,433,649 - 8,540,703 (-)Ensembl
GRCm38.p6 Ensembl18,363,425 - 8,470,479 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140295   ⟹   ENSMUSP00000118101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,431,699 - 9,369,463 (-)Ensembl
GRCm38.p6 Ensembl18,361,475 - 9,299,238 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140302   ⟹   ENSMUSP00000117397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,432,902 - 9,370,103 (-)Ensembl
GRCm38.p6 Ensembl18,362,678 - 9,299,878 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144593   ⟹   ENSMUSP00000123632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,746,197 - 9,369,507 (-)Ensembl
GRCm38.p6 Ensembl18,675,973 - 9,299,282 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191683   ⟹   ENSMUSP00000141839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl18,431,699 - 9,369,089 (-)Ensembl
GRCm38.p6 Ensembl18,361,475 - 9,298,864 (-)Ensembl
Ensembl Acc Id: ENSMUST00000194098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl19,020,534 - 9,022,646 (-)Ensembl
GRCm38.p6 Ensembl18,950,310 - 8,952,422 (-)Ensembl
RefSeq Acc Id: NM_001290390   ⟹   NP_001277319
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,370,102 (-)NCBI
GRCm3818,359,739 - 9,299,877 (-)NCBI
Celera18,316,721 - 9,265,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290392   ⟹   NP_001277321
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,370,102 (-)NCBI
GRCm3818,359,739 - 9,299,877 (-)NCBI
Celera18,316,721 - 9,265,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290393   ⟹   NP_001277322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,370,102 (-)NCBI
GRCm3818,359,739 - 9,299,877 (-)NCBI
Celera18,316,721 - 9,265,758 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027671   ⟹   NP_081947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,370,102 (-)NCBI
GRCm3818,359,739 - 9,299,877 (-)NCBI
MGSCv3718,352,742 - 9,289,811 (-)RGD
Celera18,316,721 - 9,265,758 (-)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495572   ⟹   XP_006495635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
GRCm3818,359,739 - 9,301,657 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238407   ⟹   XP_011236709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
GRCm3818,359,739 - 9,301,657 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312320   ⟹   XP_017167809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,319,861 (-)NCBI
GRCm3818,359,739 - 9,250,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312321   ⟹   XP_017167810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
GRCm3818,359,739 - 9,301,657 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153658   ⟹   XP_036009551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153660   ⟹   XP_036009553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153661   ⟹   XP_036009554
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153662   ⟹   XP_036009555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,319,891 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153663   ⟹   XP_036009556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,652,600 - 9,371,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153664   ⟹   XP_036009557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153666   ⟹   XP_036009559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778003
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3918,429,963 - 9,371,882 (-)NCBI
GRCm3818,445,027 - 9,301,657 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001277319 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277321 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277322 (Get FASTA)   NCBI Sequence Viewer  
  NP_081947 (Get FASTA)   NCBI Sequence Viewer  
  XP_006495635 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236709 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167809 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167810 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009551 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009553 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009554 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009555 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009556 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009557 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009559 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK53399 (Get FASTA)   NCBI Sequence Viewer  
  BAB30501 (Get FASTA)   NCBI Sequence Viewer  
  BAC30104 (Get FASTA)   NCBI Sequence Viewer  
  BAC30143 (Get FASTA)   NCBI Sequence Viewer  
  BAC37809 (Get FASTA)   NCBI Sequence Viewer  
  BAC38825 (Get FASTA)   NCBI Sequence Viewer  
  EDL14271 (Get FASTA)   NCBI Sequence Viewer  
  EDL14272 (Get FASTA)   NCBI Sequence Viewer  
  EDL14273 (Get FASTA)   NCBI Sequence Viewer  
  EDL14274 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000111151
  ENSMUSP00000111151.3
  ENSMUSP00000117397.2
  ENSMUSP00000118101
  ENSMUSP00000118101.3
  ENSMUSP00000122134
  ENSMUSP00000122134.2
  ENSMUSP00000123632.2
  ENSMUSP00000141839
  ENSMUSP00000141839.2
GenBank Protein Q925E1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_081947   ⟸   NM_027671
- Peptide Label: isoform 1
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8BNW6 (UniProtKB/TrEMBL),   E9Q0U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495635   ⟸   XM_006495572
- Peptide Label: isoform X3
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277321   ⟸   NM_001290392
- Peptide Label: isoform 3
- UniProtKB: Q8CAI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277322   ⟸   NM_001290393
- Peptide Label: isoform 1
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8BNW6 (UniProtKB/TrEMBL),   E9Q0U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277319   ⟸   NM_001290390
- Peptide Label: isoform 2
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8C415 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236709   ⟸   XM_011238407
- Peptide Label: isoform X1
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8BNW6 (UniProtKB/TrEMBL),   E9Q0U6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017167810   ⟸   XM_017312321
- Peptide Label: isoform X2
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8C415 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017167809   ⟸   XM_017312320
- Peptide Label: isoform X1
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8BNW6 (UniProtKB/TrEMBL),   E9Q0U6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000123632   ⟸   ENSMUST00000144593
Ensembl Acc Id: ENSMUSP00000141839   ⟸   ENSMUST00000191683
Ensembl Acc Id: ENSMUSP00000122134   ⟸   ENSMUST00000132064
Ensembl Acc Id: ENSMUSP00000117397   ⟸   ENSMUST00000140302
Ensembl Acc Id: ENSMUSP00000111151   ⟸   ENSMUST00000115488
Ensembl Acc Id: ENSMUSP00000118101   ⟸   ENSMUST00000140295
RefSeq Acc Id: XP_036009554   ⟸   XM_036153661
- Peptide Label: isoform X5
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036009559   ⟸   XM_036153666
- Peptide Label: isoform X7
- UniProtKB: Q8CAI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009553   ⟸   XM_036153660
- Peptide Label: isoform X4
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036009557   ⟸   XM_036153664
- Peptide Label: isoform X7
- UniProtKB: Q8CAI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009551   ⟸   XM_036153658
- Peptide Label: isoform X2
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot),   Q8C415 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009555   ⟸   XM_036153662
- Peptide Label: isoform X5
- UniProtKB: Q9D3Z5 (UniProtKB/Swiss-Prot),   Q925E1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036009556   ⟸   XM_036153663
- Peptide Label: isoform X6
Protein Domains
PDZ   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q925E1-F1-model_v2 AlphaFold Q925E1 1-517 view protein structure

Promoters
RGD ID:6873140
Promoter ID:EPDNEW_M21
Type:single initiation site
Name:Sntg1_2
Description:Mus musculus syntrophin, gamma 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3818,792,220 - 8,792,280EPDNEW
RGD ID:6818508
Promoter ID:MM_KWN:72
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_027671,   OTTMUST00000082930,   OTTMUST00000082931,   OTTMUST00000082932,   OTTMUST00000082933,   OTTMUST00000082936,   UC007AGI.1,   UC007AGJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3619,289,041 - 9,289,542 (-)MPROMDB
RGD ID:6873142
Promoter ID:EPDNEW_M22
Type:multiple initiation site
Name:Sntg1_1
Description:Mus musculus syntrophin, gamma 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3819,299,877 - 9,299,937EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918346 AgrOrtholog
Ensembl Genes ENSMUSG00000025909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000115488 ENTREZGENE
  ENSMUST00000115488.3 UniProtKB/TrEMBL
  ENSMUST00000132064 ENTREZGENE
  ENSMUST00000132064.8 UniProtKB/TrEMBL
  ENSMUST00000140295 ENTREZGENE
  ENSMUST00000140295.8 UniProtKB/TrEMBL
  ENSMUST00000140302.8 UniProtKB/TrEMBL
  ENSMUST00000144593.8 UniProtKB/TrEMBL
  ENSMUST00000191683 ENTREZGENE
  ENSMUST00000191683.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntrophin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1918346 ENTREZGENE
NCBI Gene 71096 ENTREZGENE
PANTHER PTHR10554 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10554:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntrophin_4th UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sntg1 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6REU8_MOUSE UniProtKB/TrEMBL
  D6RJM3_MOUSE UniProtKB/TrEMBL
  E9Q0U6 ENTREZGENE
  Q8BNW6 ENTREZGENE, UniProtKB/TrEMBL
  Q8C415 ENTREZGENE, UniProtKB/TrEMBL
  Q8CAI8 ENTREZGENE, UniProtKB/TrEMBL
  Q925E1 ENTREZGENE
  Q9D3Z5 ENTREZGENE
  SNTG1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary E9Q0U6 UniProtKB/TrEMBL
  Q9D3Z5 UniProtKB/Swiss-Prot