Ftx (Ftx transcript, Xist regulator, non-protein coding) - Rat Genome Database

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Gene: Ftx (Ftx transcript, Xist regulator, non-protein coding) Mus musculus
Analyze
Symbol: Ftx
Name: Ftx transcript, Xist regulator, non-protein coding
RGD ID: 1617445
MGI Page MGI
Description: Acts upstream of or within camera-type eye morphogenesis; positive regulation of gene expression via chromosomal CpG island demethylation; and random inactivation of X chromosome. Is expressed in early conceptus. Orthologous to human FTX (FTX transcript, XIST regulator).
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: B230206F22Rik; BB219131; Ftx transcript, Xist regulator (non-protein coding); NCRNA00182; Thcytx
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,604,516 - 102,667,360 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX102,592,988 - 102,667,512 (-)EnsemblGRCm39 Ensembl
GRCm38X103,560,910 - 103,623,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,560,907 - 103,623,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X100,756,249 - 100,819,093 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,802,945 - 100,817,839 (-)NCBIMGSCv36mm8
CeleraX90,462,228 - 90,525,252 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FtxMouseautistic disorder  ISOFTX (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
FtxMouseautosomal hemophilia A  ISOFTX (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
FtxMousefactor VIII deficiency  ISOFTX (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
FtxMousesyndromic X-linked intellectual disability Lubs type  ISOFTX (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868

1 to 20 of 30 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FtxMouse4,4'-sulfonyldiphenol increases methylationEXP 6480464bisphenol S results in increased methylation of FTX promoterCTDPMID:33297965
FtxMouseaflatoxin B1 increases methylationISOFTX (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of FTX gene and Aflatoxin B1 results in increased methylation of FTX promoterCTDPMID:27153756 and PMID:30157460
FtxMouseaflatoxin B1 affects methylationISOFTX (Homo sapiens)6480464Aflatoxin B1 affects the methylation of FTX intronCTDPMID:30157460
FtxMouseaflatoxin B1 decreases expressionISOFTX (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of FTX mRNACTDPMID:30157460
FtxMouseAflatoxin B2 alpha decreases methylationISOFTX (Homo sapiens)6480464aflatoxin B2 results in decreased methylation of FTX intronCTDPMID:30157460
FtxMousebenzo[a]pyrene affects methylationISOFTX (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of FTX intron and Benzo(a)pyrene affects the methylation of FTX promoterCTDPMID:27901495 and PMID:30157460
FtxMousebenzo[e]pyrene increases methylationISOFTX (Homo sapiens)6480464benzo(e)pyrene results in increased methylation of FTX intronCTDPMID:30157460
FtxMousebis(2-ethylhexyl) phthalate increases methylationEXP 6480464Diethylhexyl Phthalate results in increased methylation of FTX geneCTDPMID:38833407
FtxMousebisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of FTX mRNACTDPMID:32156529
FtxMouseCuprizon increases expressionISOFtx (Rattus norvegicus)6480464Cuprizone results in increased expression of FTX mRNACTDPMID:26577399 and PMID:27523638
FtxMousedorsomorphin multiple interactionsISOFTX (Homo sapiens)6480464[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...CTDPMID:27188386
FtxMousedoxorubicin decreases expressionISOFTX (Homo sapiens)6480464Doxorubicin results in decreased expression of FTX mRNACTDPMID:29803840
FtxMouseentinostat increases expressionISOFTX (Homo sapiens)6480464entinostat results in increased expression of FTX mRNACTDPMID:26272509
FtxMousefipronil multiple interactionsISOFTX (Homo sapiens)6480464[fipronil co-treated with DEET] results in decreased expression of FTX mRNACTDPMID:28991164
FtxMousemaneb multiple interactionsEXP 6480464[Maneb co-treated with Paraquat] results in increased expression of FTX mRNACTDPMID:36117858
FtxMousemercury dibromide increases expressionISOFTX (Homo sapiens)6480464mercuric bromide results in increased expression of FTX mRNACTDPMID:26272509
FtxMousemethapyrilene increases methylationISOFTX (Homo sapiens)6480464Methapyrilene results in increased methylation of FTX intronCTDPMID:30157460
FtxMousemethylmercury chloride increases expressionISOFTX (Homo sapiens)6480464methylmercuric chloride results in increased expression of FTX mRNACTDPMID:27188386
FtxMousemethylparaben decreases expressionISOFTX (Homo sapiens)6480464methylparaben results in decreased expression of FTX mRNACTDPMID:31745603
FtxMouseN,N-diethyl-m-toluamide multiple interactionsISOFTX (Homo sapiens)6480464[fipronil co-treated with DEET] results in decreased expression of FTX mRNACTDPMID:28991164

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Biological Process
1 to 10 of 10 rows

  
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FtxMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FtxMousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12045143   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15747579   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21118898   PMID:23940725   PMID:24316575   PMID:24613346   PMID:24899465   PMID:29706539   PMID:30237402   PMID:31840653   PMID:32238933   PMID:33359189   PMID:37196079  



Ftx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X102,604,516 - 102,667,360 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX102,592,988 - 102,667,512 (-)EnsemblGRCm39 Ensembl
GRCm38X103,560,910 - 103,623,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX103,560,907 - 103,623,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X100,756,249 - 100,819,093 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,802,945 - 100,817,839 (-)NCBIMGSCv36mm8
CeleraX90,462,228 - 90,525,252 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.21NCBI
FTX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X74,028,136 - 74,293,574 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX73,940,435 - 74,293,574 (-)EnsemblGRCh38hg38GRCh38
GRCh37X73,247,971 - 73,513,409 (-)NCBIGRCh37GRCh37hg19GRCh37
CeleraX73,531,450 - 73,796,874 (-)NCBICelera
Cytogenetic MapXq13.2NCBI
HuRefX66,883,983 - 67,148,900 (-)NCBIHuRef
CHM1_1X73,140,944 - 73,406,404 (-)NCBICHM1_1
T2T-CHM13v2.0X72,461,681 - 72,727,079 (-)NCBIT2T-CHM13v2.0
Ftx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X72,654,112 - 72,696,097 (-)NCBIGRCr8
mRatBN7.2X68,588,349 - 68,630,338 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_UtxX70,097,540 - 70,139,525 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X73,597,775 - 73,639,765 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X71,158,965 - 71,200,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X74,440,265 - 74,484,164 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X75,275,417 - 75,291,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X91,517,765 - 91,592,998 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX69,953,926 - 69,995,859 (-)NCBICelera
Cytogenetic MapXq22NCBI

.

.
Variants in Ftx
1554 total Variants

Predicted Target Of
Summary Value
Count of predictions:453
Count of miRNA genes:284
Interacting mature miRNAs:305
Transcripts:ENSMUST00000123841, ENSMUST00000125419, ENSMUST00000130063, ENSMUST00000145803, ENSMUST00000156211, ENSMUST00000156240
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

1 to 10 of 10 rows
BB219131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X103,569,574 - 103,569,670UniSTSGRCm38
MGSCv37X100,764,913 - 100,765,009UniSTSGRCm37
CeleraX90,471,004 - 90,471,100UniSTS
Cytogenetic MapXDUniSTS
cM MapX42.0UniSTS
px-31f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map10A3-A4UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B5UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map10C3UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map10B5.1UniSTS
Cytogenetic Map18E4UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map12C2UniSTS
Cytogenetic Map13B2UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map18D3UniSTS
cM Map1060.0UniSTS
cM Map154.6UniSTS
cM Map439.4UniSTS
cM Map1170.0UniSTS
cM Map1336.0UniSTS
cM Map518.2UniSTS
cM Map1229.0UniSTS
cM MapX42.0UniSTS
cM Map1347.01UniSTS
DXPas31  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X103,597,150 - 103,597,316UniSTSGRCm38
MGSCv37X100,792,489 - 100,792,655UniSTSGRCm37
CeleraX90,498,722 - 90,498,896UniSTS
Cytogenetic MapXDUniSTS
cM MapX42.0UniSTS







Ensembl Acc Id: ENSMUST00000123841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,651,212 - 102,666,106 (-)Ensembl
GRCm38.p6 EnsemblX103,607,606 - 103,622,500 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,594 - 102,667,360 (-)Ensembl
GRCm38.p6 EnsemblX103,607,553 - 103,623,754 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,604,513 - 102,667,360 (-)Ensembl
GRCm38.p6 EnsemblX103,560,907 - 103,623,754 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,660,505 (-)Ensembl
GRCm38.p6 EnsemblX103,569,568 - 103,616,863 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,667,269 (-)Ensembl
GRCm38.p6 EnsemblX103,569,568 - 103,623,663 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,606,503 - 102,660,560 (-)Ensembl
GRCm38.p6 EnsemblX103,562,897 - 103,616,954 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,620,032 - 102,624,707 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,606,199 - 102,660,441 (-)Ensembl
GRCm38.p6 EnsemblX103,562,593 - 103,616,835 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,177 - 102,660,551 (-)Ensembl
GRCm38.p6 EnsemblX103,569,571 - 103,616,945 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,300 - 102,667,396 (-)Ensembl
GRCm38.p6 EnsemblX103,587,694 - 103,623,790 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,667,396 (-)Ensembl
GRCm38.p6 EnsemblX103,569,566 - 103,623,790 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,651,851 (-)Ensembl
GRCm38.p6 EnsemblX103,569,568 - 103,608,245 (-)Ensembl
Ensembl Acc Id: ENSMUST00000238083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,300 - 102,665,975 (-)Ensembl
GRCm38.p6 EnsemblX103,587,694 - 103,622,369 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,188 - 102,649,227 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,649,214 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,111 - 102,667,358 (-)Ensembl
Ensembl Acc Id: ENSMUST00000241693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,177 - 102,667,328 (-)Ensembl
Ensembl Acc Id: ENSMUST00000242041
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,108 - 102,649,317 (-)Ensembl
Ensembl Acc Id: ENSMUST00000242152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,179 - 102,667,314 (-)Ensembl
Ensembl Acc Id: ENSMUST00000242414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,578 - 102,667,360 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,097 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,647,915 - 102,667,328 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,606,496 - 102,649,259 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,112 - 102,660,457 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,179 - 102,649,230 (-)Ensembl
Ensembl Acc Id: ENSMUST00000243948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,660,456 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,227 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,667,363 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,212 (-)Ensembl
Ensembl Acc Id: ENSMUST00000244581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,111 - 102,649,236 (-)Ensembl
Ensembl Acc Id: ENSMUST00000245048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,606,924 - 102,649,276 (-)Ensembl
Ensembl Acc Id: ENSMUST00000246658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,087 - 102,667,345 (-)Ensembl
Ensembl Acc Id: ENSMUST00000246726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,594 - 102,667,316 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,592,988 - 102,649,254 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,593,016 - 102,649,247 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,593,157 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,593,158 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,111 - 102,667,338 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,667,360 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,667,348 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,667,339 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,084 - 102,660,571 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,291 - 102,660,557 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,295 - 102,660,560 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,293 - 102,660,416 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,666,106 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,660,570 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,660,557 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,660,544 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,660,415 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,658,798 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,606,748 - 102,649,222 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,104 - 102,649,225 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,097 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,142 - 102,649,223 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,293 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,293 - 102,649,223 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,293 - 102,649,223 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,295 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,295 - 102,649,223 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,607,295 - 102,649,212 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,665,988 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,315 - 102,667,512 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,649,295 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,292 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,255 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,319 - 102,667,387 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,667,339 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,316 - 102,667,360 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,212 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,174 - 102,649,210 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,322 - 102,667,317 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,322 - 102,665,980 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,321 - 102,660,562 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,316 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,316 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,631,322 - 102,649,223 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,578 - 102,667,330 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,578 - 102,667,257 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,651,098 - 102,667,339 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,652,314 - 102,667,347 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,651,203 - 102,666,069 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,637,395 - 102,649,224 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,656,314 - 102,667,363 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,578 - 102,660,530 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,589 - 102,660,495 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,649,590 - 102,660,469 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,658,151 - 102,667,322 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,652,732 - 102,660,427 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,656,359 - 102,660,527 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,613,172 - 102,616,703 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,658,377 - 102,660,499 (-)Ensembl
Ensembl Acc Id: ENSMUST00000319804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX102,659,920 - 102,660,467 (-)Ensembl
RefSeq Acc Id: NR_028380
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X102,613,111 - 102,667,360 (-)NCBI
GRCm38X103,569,505 - 103,623,754 (-)NCBI
MGSCv37X100,756,249 - 100,819,093 (-)RGD
CeleraX90,462,228 - 90,525,252 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_028381
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X102,604,516 - 102,667,360 (-)NCBI
GRCm38X103,560,910 - 103,623,754 (-)ENTREZGENE
MGSCv37X100,756,249 - 100,819,093 (-)RGD
CeleraX90,462,228 - 90,525,252 (-)RGD
cM MapX ENTREZGENE
Sequence:
RGD ID:6845518
Promoter ID:MM_KWN:61443
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   Kidney,   MEF_B6
Transcripts:UC009TZV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X100,810,431 - 100,811,377 (-)MPROMDB
RGD ID:6846314
Promoter ID:MM_KWN:61444
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000044293,   UC009TZT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X100,811,916 - 100,812,917 (-)MPROMDB
RGD ID:6846308
Promoter ID:MM_KWN:61446
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR_028380,   OTTMUST00000044290,   OTTMUST00000044294
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X100,818,729 - 100,819,229 (-)MPROMDB
RGD ID:15095136
Promoter ID:EPDNEWNC_M3051
Type:multiple initiation site
Name:Ftx_2
Description:Ftx transcript, Xist regulator (non-protein coding)[Source:MGI Symbol;Acc:MGI:1926128]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X103,616,916 - 103,616,976EPDNEWNC
RGD ID:15095133
Promoter ID:EPDNEWNC_M3052
Type:initiation region
Name:Ftx_1
Description:Ftx transcript, Xist regulator (non-protein coding)[Source:MGI Symbol;Acc:MGI:1926128]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X103,623,711 - 103,623,771EPDNEWNC
RGD ID:13681138
Promoter ID:EPDNEW_M24718
Type:initiation region
Name:Ftx_1
Description:Mus musculus Ftx transcript, Xist regulator (non-protein coding), transcript variant 1, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X103,623,754 - 103,623,814EPDNEW


1 to 40 of 43 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000086370 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000130063 ENTREZGENE
  ENSMUST00000156211 ENTREZGENE
MGD MGI:1926128 ENTREZGENE
NCBI Gene 78878 ENTREZGENE
PhenoGen Ftx PhenoGen
RNAcentral URS000075B428 RNACentral
  URS000075E710 RNACentral
  URS00007627B9 RNACentral
  URS0000768A79 RNACentral
  URS000077319A RNACentral
  URS0000778C47 RNACentral
  URS0000784A6B RNACentral
  URS0000E6171A RNACentral
  URS0000E64E01 RNACentral
  URS0000E6A031 RNACentral
  URS0000E7966E RNACentral
  URS0000E7AF31 RNACentral
  URS0000E90841 RNACentral
  URS00025E35DA RNACentral
  URS00025E4047 RNACentral
  URS00025E4060 RNACentral
  URS00025E4A97 RNACentral
  URS00025E629C RNACentral
  URS00025E6DFE RNACentral
  URS00025E6E22 RNACentral
  URS00025E703D RNACentral
  URS00025E7558 RNACentral
  URS00025EB862 RNACentral
  URS00025EC2D7 RNACentral
  URS00025ED21F RNACentral
  URS00025ED2D8 RNACentral
  URS00025EDF97 RNACentral
  URS00025EE4EF RNACentral
  URS00025EF694 RNACentral
  URS00025F276D RNACentral
  URS00025F2B97 RNACentral
  URS00025F33AB RNACentral
  URS00025F380D RNACentral
  URS00025F4102 RNACentral
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Ftx  Ftx transcript, Xist regulator, non-protein coding  Ftx  Ftx transcript, Xist regulator (non-protein coding)  Symbol and/or name change 5135510 APPROVED
2013-02-20 Ftx  Ftx transcript, Xist regulator (non-protein coding)  Thcytx  thrombocytosis, familial X-linked  Symbol and/or name change 5135510 APPROVED
2012-11-27 Thcytx  thrombocytosis, familial X-linked  B230206F22Rik  RIKEN cDNA B230206F22 gene  Symbol and/or name change 5135510 APPROVED