Or9g21-ps (olfactory receptor family 9 subfamily G member 21, pseudogene 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Or9g21-ps (olfactory receptor family 9 subfamily G member 21, pseudogene 1) Mus musculus
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Symbol: Or9g21-ps
Name: olfactory receptor family 9 subfamily G member 21, pseudogene 1
RGD ID: 1617275
MGI Page MGI
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: GA_x5J8B7W2F7R-2521-3120; MOR213; MOR213-8; olfactory receptor 1004, pseudogene 1; Olfr1004-ps1
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39285,486,602 - 85,487,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl285,486,600 - 85,487,179 (-)EnsemblGRCm39 Ensembl
GRCm38285,656,258 - 85,656,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl285,656,256 - 85,656,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv37285,496,415 - 85,497,010 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36285,457,097 - 85,457,692 (-)NCBIMGSCv36mm8
Celera287,240,392 - 87,240,987 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:11802173   PMID:11875048   PMID:14611657   PMID:32295537  



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Variants in Or9g21-ps
29 total Variants

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:56
Interacting mature miRNAs:56
Transcripts:ENSMUST00000120361
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse

1 to 10 of 43 rows






Ensembl Acc Id: ENSMUST00000120361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl285,486,600 - 85,487,179 (-)Ensembl
GRCm38.p6 Ensembl285,656,256 - 85,656,835 (-)Ensembl
GenBank Protein AAL61510 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000083358 Ensembl, ENTREZGENE
MGD MGI:3030838 ENTREZGENE
NCBI Gene 258244 ENTREZGENE
PhenoGen Or9g21-ps PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or9g21-ps  olfactory receptor family 9 subfamily G member 21, pseudogene 1  Olfr1004-ps1  olfactory receptor 1004, pseudogene 1  Symbol and/or name change 5135510 APPROVED