Vmn1r57 (vomeronasal 1 receptor 57) - Rat Genome Database

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Gene: Vmn1r57 (vomeronasal 1 receptor 57) Mus musculus
Analyze
Symbol: Vmn1r57
Name: vomeronasal 1 receptor 57
RGD ID: 1617003
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EG665150; Gm7519; vomernasal 1 receptor Vmn1r57
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,223,477 - 5,224,409 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,221,492 - 5,224,735 (+)EnsemblGRCm39 Ensembl
GRCm3875,220,478 - 5,221,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,218,493 - 5,221,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv3775,172,080 - 5,173,012 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,821,731 - 4,824,497 (+)NCBIMGSCv36mm8
Celera74,967,472 - 4,968,404 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r57
74 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:114
Interacting mature miRNAs:115
Transcripts:ENSMUST00000170780
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000170780   ⟹   ENSMUSP00000131917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,223,477 - 5,224,409 (+)Ensembl
GRCm38.p6 Ensembl75,220,478 - 5,221,410 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227798   ⟹   ENSMUSP00000153876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,221,492 - 5,224,735 (+)Ensembl
GRCm38.p6 Ensembl75,218,493 - 5,221,736 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,221,492 - 5,224,735 (+)Ensembl
GRCm38.p6 Ensembl75,218,493 - 5,221,736 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228062   ⟹   ENSMUSP00000153848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,221,492 - 5,224,735 (+)Ensembl
GRCm38.p6 Ensembl75,218,493 - 5,221,736 (+)Ensembl
RefSeq Acc Id: NM_001166734   ⟹   NP_001160206
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,223,477 - 5,224,409 (+)NCBI
GRCm3875,220,478 - 5,221,410 (+)ENTREZGENE
MGSCv3775,172,080 - 5,173,012 (+)RGD
Celera74,967,472 - 4,968,404 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001160206 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000131917
  ENSMUSP00000131917.2
  ENSMUSP00000153848.2
  ENSMUSP00000153876.2
RefSeq Acc Id: NP_001160206   ⟸   NM_001166734
- UniProtKB: K7N731 (UniProtKB/TrEMBL),   Q24JU6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000131917   ⟸   ENSMUST00000170780
Ensembl Acc Id: ENSMUSP00000153848   ⟸   ENSMUST00000228062
Ensembl Acc Id: ENSMUSP00000153876   ⟸   ENSMUST00000227798
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-K7N731-F1-model_v2 AlphaFold K7N731 1-310 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091652 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000170780 ENTREZGENE
  ENSMUST00000170780.2 UniProtKB/TrEMBL
  ENSMUST00000227798.2 UniProtKB/TrEMBL
  ENSMUST00000228062.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:665150 UniProtKB/TrEMBL
MGD MGI:3646165 ENTREZGENE
NCBI Gene 665150 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r57 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt K7N731 ENTREZGENE, UniProtKB/TrEMBL
  Q24JU6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r57  vomeronasal 1 receptor 57  Gm7519  predicted gene 7519  Symbol and/or name change 5135510 APPROVED