Usp34 (ubiquitin specific peptidase 34) - Rat Genome Database

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Gene: Usp34 (ubiquitin specific peptidase 34) Mus musculus
Analyze
Symbol: Usp34
Name: ubiquitin specific peptidase 34
RGD ID: 1616844
MGI Page MGI
Description: Predicted to enable cysteine-type deubiquitinase activity and cysteine-type endopeptidase activity. Predicted to be involved in positive regulation of canonical Wnt signaling pathway; protein K48-linked deubiquitination; and regulation of protein stability. Predicted to be active in cytosol and nucleus. Orthologous to human USP34 (ubiquitin specific peptidase 34).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: A530081C03Rik; deubiquitinating enzyme 34; Mur; Murr2; U2af1-rs1 region 2; ubiquitin carboxyl-terminal hydrolase 34; ubiquitin specific protease 34; ubiquitin thioesterase 34; ubiquitin thiolesterase 34; ubiquitin-specific-processing protease 34
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,256,433 - 23,440,560 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,256,895 - 23,440,560 (+)EnsemblGRCm39 Ensembl
GRCm381123,303,185 - 23,490,560 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,306,895 - 23,490,560 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,206,895 - 23,390,560 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,297,186 - 23,346,963 (+)NCBIMGSCv36mm8
Celera1125,434,085 - 25,618,456 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9001233   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12040188   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:14621295   PMID:14691545   PMID:15345747   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17015433   PMID:17203969   PMID:17967808   PMID:18799693   PMID:21677750  
PMID:21873635   PMID:26273529   PMID:26811477   PMID:28499884   PMID:30181118   PMID:30550785   PMID:30995482   PMID:32212276   PMID:32325033  


Genomics

Comparative Map Data
Usp34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,256,433 - 23,440,560 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,256,895 - 23,440,560 (+)EnsemblGRCm39 Ensembl
GRCm381123,303,185 - 23,490,560 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,306,895 - 23,490,560 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,206,895 - 23,390,560 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,297,186 - 23,346,963 (+)NCBIMGSCv36mm8
Celera1125,434,085 - 25,618,456 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.29NCBI
USP34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,187,463 - 61,471,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,187,463 - 61,471,087 (-)EnsemblGRCh38hg38GRCh38
GRCh37261,414,598 - 61,698,222 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,268,094 - 61,551,353 (-)NCBINCBI36Build 36hg18NCBI36
Build 34261,326,887 - 61,544,591NCBI
Celera261,259,053 - 61,542,286 (-)NCBICelera
Cytogenetic Map2p15NCBI
HuRef261,155,323 - 61,406,983 (-)NCBIHuRef
CHM1_1261,345,076 - 61,628,268 (-)NCBICHM1_1
T2T-CHM13v2.0261,193,315 - 61,476,925 (-)NCBIT2T-CHM13v2.0
Usp34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,487,110 - 101,677,519 (+)NCBIGRCr8
mRatBN7.21497,285,799 - 97,476,376 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,286,018 - 97,476,376 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,618,406 - 101,808,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,862,754 - 103,052,913 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,334,322 - 99,524,478 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,060,653 - 108,264,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,143,869 - 108,264,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014108,136,049 - 108,169,242 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.014104,954,066 - 105,100,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414103,990,220 - 104,426,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1496,263,246 - 96,453,075 (+)NCBICelera
Cytogenetic Map14q22NCBI
Usp34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,474,098 - 22,689,322 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,434,292 - 22,689,944 (+)NCBIChiLan1.0ChiLan1.0
USP34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21264,912,972 - 65,196,317 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A64,916,937 - 65,200,268 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,272,350 - 61,555,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A62,411,168 - 62,643,009 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,411,173 - 62,644,812 (-)Ensemblpanpan1.1panPan2
USP34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,264,605 - 61,459,603 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,267,478 - 61,511,347 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1061,154,885 - 61,401,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,273,979 - 62,520,172 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,276,482 - 62,520,570 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,976,715 - 62,205,083 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,261,456 - 62,507,713 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,559,525 - 62,802,709 (-)NCBIUU_Cfam_GSD_1.0
Usp34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,670,538 - 21,890,968 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,680,950 - 6,869,651 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,680,324 - 6,862,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,370,691 - 80,587,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,330,896 - 80,589,514 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,382,219 - 84,510,793 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,516,555 - 45,798,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,516,587 - 45,798,054 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604566,003,118 - 66,289,921 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624833444,250 - 719,276 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624833444,143 - 719,840 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp34
4404 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2494
Count of miRNA genes:697
Interacting mature miRNAs:926
Transcripts:ENSMUST00000070402, ENSMUST00000101465, ENSMUST00000125701, ENSMUST00000129368, ENSMUST00000129521, ENSMUST00000130131, ENSMUST00000137823, ENSMUST00000148927, ENSMUST00000155984, ENSMUST00000180046
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
AI450991  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,489,464 - 23,489,670UniSTSGRCm38
MGSCv371123,389,464 - 23,389,670UniSTSGRCm37
Celera1125,617,360 - 25,617,566UniSTS
Cytogenetic Map11A3.2UniSTS
Whitehead/MRC_RH11397.65UniSTS
UniSTS:236535  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,489,944 - 23,490,062UniSTSGRCm38
MGSCv371123,389,944 - 23,390,062UniSTSGRCm37
Celera1125,617,840 - 25,617,958UniSTS
Cytogenetic Map11A3.2UniSTS
UniSTS:225269  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,399,479 - 23,399,675UniSTSGRCm38
MGSCv371123,299,479 - 23,299,675UniSTSGRCm37
Celera1125,527,404 - 25,527,600UniSTS
Cytogenetic Map11A3.2UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001190401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK033182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM933277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ179166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB520513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF744935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK388717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN533811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN537815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN705250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV556728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV884061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV649543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV650570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV662426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000125701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,436,805 - 23,437,323 (+)Ensembl
GRCm38.p6 Ensembl1123,486,805 - 23,487,323 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129368   ⟹   ENSMUSP00000121426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,420,289 - 23,438,368 (+)Ensembl
GRCm38.p6 Ensembl1123,470,289 - 23,488,368 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,407,938 - 23,410,897 (+)Ensembl
GRCm38.p6 Ensembl1123,457,938 - 23,460,897 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130131   ⟹   ENSMUSP00000115168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,370,055 - 23,406,686 (+)Ensembl
GRCm38.p6 Ensembl1123,420,055 - 23,456,686 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137823   ⟹   ENSMUSP00000120747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,256,916 - 23,439,744 (+)Ensembl
GRCm38.p6 Ensembl1123,306,916 - 23,489,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,408,077 - 23,410,610 (+)Ensembl
GRCm38.p6 Ensembl1123,458,077 - 23,460,610 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,364,976 - 23,370,652 (+)Ensembl
GRCm38.p6 Ensembl1123,414,976 - 23,420,652 (+)Ensembl
Ensembl Acc Id: ENSMUST00000180046   ⟹   ENSMUSP00000137430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,256,895 - 23,440,560 (+)Ensembl
GRCm38.p6 Ensembl1123,306,895 - 23,490,560 (+)Ensembl
RefSeq Acc Id: NM_001190401   ⟹   NP_001177330
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,895 - 23,440,560 (+)NCBI
GRCm381123,306,895 - 23,490,560 (+)NCBI
MGSCv371123,206,895 - 23,390,560 (+)RGD
Celera1125,434,085 - 25,618,456 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514565   ⟹   XP_006514628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,485 - 23,439,741 (+)NCBI
GRCm381123,303,185 - 23,489,741 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514566   ⟹   XP_006514629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,433 - 23,439,741 (+)NCBI
GRCm381123,306,433 - 23,489,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514567   ⟹   XP_006514630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,485 - 23,439,741 (+)NCBI
GRCm381123,303,185 - 23,489,741 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314317   ⟹   XP_017169806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,485 - 23,439,741 (+)NCBI
GRCm381123,303,185 - 23,489,741 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245632   ⟹   XP_030101492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,593 - 23,439,741 (+)NCBI
GRCm381123,306,481 - 23,489,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245633   ⟹   XP_030101493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,593 - 23,439,741 (+)NCBI
GRCm381123,306,520 - 23,489,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156397   ⟹   XP_036012290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,256,485 - 23,439,741 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001177330   ⟸   NM_001190401
- UniProtKB: Q7TMJ6 (UniProtKB/Swiss-Prot),   Q6P563 (UniProtKB/Swiss-Prot),   Q3UPN0 (UniProtKB/Swiss-Prot),   Q3UF93 (UniProtKB/Swiss-Prot),   A2AF77 (UniProtKB/Swiss-Prot),   A2AF27 (UniProtKB/Swiss-Prot),   A2AF26 (UniProtKB/Swiss-Prot),   Q8CCH0 (UniProtKB/Swiss-Prot),   Q6ZQ93 (UniProtKB/Swiss-Prot),   F6WJB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514628   ⟸   XM_006514565
- Peptide Label: isoform X1
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514630   ⟸   XM_006514567
- Peptide Label: isoform X4
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514629   ⟸   XM_006514566
- Peptide Label: isoform X2
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169806   ⟸   XM_017314317
- Peptide Label: isoform X5
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101492   ⟸   XM_030245632
- Peptide Label: isoform X6
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101493   ⟸   XM_030245633
- Peptide Label: isoform X7
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000115168   ⟸   ENSMUST00000130131
Ensembl Acc Id: ENSMUSP00000121426   ⟸   ENSMUST00000129368
Ensembl Acc Id: ENSMUSP00000120747   ⟸   ENSMUST00000137823
Ensembl Acc Id: ENSMUSP00000137430   ⟸   ENSMUST00000180046
RefSeq Acc Id: XP_036012290   ⟸   XM_036156397
- Peptide Label: isoform X3
- UniProtKB: F6WJB7 (UniProtKB/TrEMBL)
Protein Domains
USP

Promoters
RGD ID:8674106
Promoter ID:EPDNEW_M15084
Type:initiation region
Name:Usp34_1
Description:Mus musculus ubiquitin specific peptidase 34 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381123,306,928 - 23,306,988EPDNEW
RGD ID:6822428
Promoter ID:MM_KWN:6671
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000011783,   OTTMUST00000011784
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361123,356,771 - 23,357,271 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109473 AgrOrtholog
Ensembl Genes ENSMUSG00000056342 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000129368.3 UniProtKB/TrEMBL
  ENSMUST00000130131.2 UniProtKB/TrEMBL
  ENSMUST00000137823.8 UniProtKB/TrEMBL
  ENSMUST00000180046 ENTREZGENE
  ENSMUST00000180046.8 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3517 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17847 UniProtKB/Swiss-Prot
MGD MGI:109473 ENTREZGENE
NCBI Gene 17847 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3517 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Usp34 PhenoGen
PROSITE USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AF26 ENTREZGENE
  A2AF27 ENTREZGENE
  A2AF77 ENTREZGENE
  F6WJB7 ENTREZGENE, UniProtKB/TrEMBL
  Q05C12_MOUSE UniProtKB/TrEMBL
  Q3UF93 ENTREZGENE
  Q3UPN0 ENTREZGENE
  Q6P563 ENTREZGENE
  Q6ZQ93 ENTREZGENE
  Q7TMJ6 ENTREZGENE
  Q8CCH0 ENTREZGENE
  UBP34_MOUSE UniProtKB/Swiss-Prot
  Z4YLQ1_MOUSE UniProtKB/TrEMBL
  Z4YN11_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2AF26 UniProtKB/Swiss-Prot
  A2AF27 UniProtKB/Swiss-Prot
  A2AF77 UniProtKB/Swiss-Prot
  Q3UF93 UniProtKB/Swiss-Prot
  Q3UPN0 UniProtKB/Swiss-Prot
  Q6P563 UniProtKB/Swiss-Prot
  Q7TMJ6 UniProtKB/Swiss-Prot
  Q8CCH0 UniProtKB/Swiss-Prot