Lysmd4 (LysM, putative peptidoglycan-binding, domain containing 4) - Rat Genome Database

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Gene: Lysmd4 (LysM, putative peptidoglycan-binding, domain containing 4) Mus musculus
Analyze
Symbol: Lysmd4
Name: LysM, putative peptidoglycan-binding, domain containing 4
RGD ID: 1616708
MGI Page MGI
Description: Predicted to be located in membrane. Is expressed in cranial ganglion and dorsal root ganglion. Orthologous to human LYSMD4 (LysM domain containing 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930506D23Rik; lysM and putative peptidoglycan-binding domain-containing protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,872,292 - 66,878,216 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,872,292 - 66,957,078 (+)EnsemblGRCm39 Ensembl
GRCm38767,222,544 - 67,228,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl767,222,544 - 67,307,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv37774,367,494 - 74,373,342 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36767,101,558 - 67,107,406 (+)NCBIMGSCv36mm8
Celera764,681,429 - 64,687,277 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21677750   PMID:32554809  


Genomics

Comparative Map Data
Lysmd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,872,292 - 66,878,216 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,872,292 - 66,957,078 (+)EnsemblGRCm39 Ensembl
GRCm38767,222,544 - 67,228,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl767,222,544 - 67,307,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv37774,367,494 - 74,373,342 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36767,101,558 - 67,107,406 (+)NCBIMGSCv36mm8
Celera764,681,429 - 64,687,277 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.71NCBI
LYSMD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381599,715,697 - 99,733,444 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1599,715,697 - 99,733,561 (-)EnsemblGRCh38hg38GRCh38
GRCh3715100,267,606 - 100,273,649 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361598,085,133 - 98,091,149 (-)NCBINCBI36Build 36hg18NCBI36
Celera1576,686,562 - 76,692,579 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1576,397,456 - 76,403,473 (-)NCBIHuRef
CHM1_115100,108,944 - 100,114,962 (-)NCBICHM1_1
T2T-CHM13v2.01597,479,959 - 97,497,213 (-)NCBIT2T-CHM13v2.0
Lysmd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81130,249,340 - 130,255,357 (+)NCBIGRCr8
mRatBN7.21120,839,180 - 120,845,148 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,839,282 - 120,845,135 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,836,073 - 128,841,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,006,175 - 136,012,051 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,810,482 - 128,816,360 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01128,199,100 - 128,204,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1128,199,322 - 128,203,268 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01129,265,273 - 129,271,167 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1113,042,015 - 113,047,904 (+)NCBICelera
Cytogenetic Map1q22NCBI
Lysmd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541627,059,941 - 27,063,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541627,057,845 - 27,063,459 (-)NCBIChiLan1.0ChiLan1.0
LYSMD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21689,269,913 - 89,275,973 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11592,954,175 - 92,972,832 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01578,396,860 - 78,413,774 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11597,590,076 - 97,596,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1597,590,076 - 97,596,035 (-)Ensemblpanpan1.1panPan2
LYSMD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,983,350 - 40,989,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,982,907 - 40,988,434 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha343,681,096 - 43,687,371 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0341,384,613 - 41,390,889 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl341,384,677 - 41,390,879 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1340,917,065 - 40,923,341 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0341,148,236 - 41,154,527 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0341,367,887 - 41,374,163 (+)NCBIUU_Cfam_GSD_1.0
Lysmd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640142,508,527 - 142,515,130 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364833,819,381 - 3,824,128 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364833,819,427 - 3,824,449 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYSMD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1138,560,995 - 138,567,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11138,560,985 - 138,567,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21154,770,996 - 154,777,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYSMD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12918,325,403 - 18,329,678 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2918,323,749 - 18,329,648 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605928,238,096 - 28,242,551 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lysmd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247684,689,264 - 4,692,902 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247684,689,536 - 4,694,577 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lysmd4
217 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1596
Count of miRNA genes:460
Interacting mature miRNAs:555
Transcripts:ENSMUST00000058771, ENSMUST00000179106
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
13506761Tbthq1_mtrabecular bone thickness QTL 1 (mouse)76234974867749748Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
13506750Tbthq2_mtrabecular bone thickness QTL 2 (mouse)76565974877549748Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
25314306Micab7_mMicrobial abundance of Bacteroidales Porphyromonadaceae Odoribacter 7 (mouse)76675405570749713Mouse

Markers in Region
UniSTS:235689  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38767,227,428 - 67,227,642UniSTSGRCm38
MGSCv37774,372,314 - 74,372,528UniSTSGRCm37
Celera764,686,249 - 64,686,463UniSTS
Cytogenetic Map7CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD774408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000058771   ⟹   ENSMUSP00000053341
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,356 - 66,878,204 (+)Ensembl
GRCm38.p6 Ensembl767,222,608 - 67,228,456 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179106   ⟹   ENSMUSP00000136151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,377 - 66,878,211 (+)Ensembl
GRCm38.p6 Ensembl767,222,629 - 67,228,463 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207757   ⟹   ENSMUSP00000147084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,344 - 66,874,374 (+)Ensembl
GRCm38.p6 Ensembl767,222,596 - 67,224,626 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207823   ⟹   ENSMUSP00000147179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,358 - 66,878,216 (+)Ensembl
GRCm38.p6 Ensembl767,222,610 - 67,228,468 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208213   ⟹   ENSMUSP00000146421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,327 - 66,878,203 (+)Ensembl
GRCm38.p6 Ensembl767,222,579 - 67,228,455 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208512   ⟹   ENSMUSP00000146860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,292 - 66,957,078 (+)Ensembl
GRCm38.p6 Ensembl767,222,544 - 67,307,330 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,873,357 - 66,885,032 (+)Ensembl
GRCm38.p6 Ensembl767,223,609 - 67,235,284 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208698   ⟹   ENSMUSP00000146624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,362 - 66,874,375 (+)Ensembl
GRCm38.p6 Ensembl767,222,614 - 67,224,627 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208998   ⟹   ENSMUSP00000146557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl766,872,364 - 66,877,015 (+)Ensembl
GRCm38.p6 Ensembl767,222,616 - 67,227,267 (+)Ensembl
RefSeq Acc Id: NM_001191051   ⟹   NP_001177980
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,364 - 66,878,216 (+)NCBI
GRCm38767,222,616 - 67,228,468 (+)NCBI
Celera764,681,365 - 64,687,289 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357962   ⟹   NP_001344891
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,292 - 66,874,375 (+)NCBI
GRCm38767,222,544 - 67,224,627 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357963   ⟹   NP_001344892
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,292 - 66,878,216 (+)NCBI
GRCm38767,222,544 - 67,228,468 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357964   ⟹   NP_001344893
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,292 - 66,878,216 (+)NCBI
GRCm38767,222,544 - 67,228,468 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175215   ⟹   NP_780424
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,292 - 66,878,216 (+)NCBI
GRCm38767,222,544 - 67,228,468 (+)ENTREZGENE
MGSCv37774,367,494 - 74,373,342 (+)RGD
Celera764,681,365 - 64,687,289 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006541236   ⟹   XP_006541299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,873,695 - 66,878,211 (+)NCBI
GRCm38767,223,946 - 67,228,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243045   ⟹   XP_030098905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,337 - 66,878,211 (+)NCBI
GRCm38767,222,588 - 67,228,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243046   ⟹   XP_030098906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39766,872,295 - 66,875,605 (+)NCBI
GRCm38767,222,547 - 67,225,857 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780424   ⟸   NM_175215
- Peptide Label: isoform A
- UniProtKB: Q6PFQ8 (UniProtKB/Swiss-Prot),   Q8CC84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001177980   ⟸   NM_001191051
- Peptide Label: isoform A
- UniProtKB: Q6PFQ8 (UniProtKB/Swiss-Prot),   Q8CC84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006541299   ⟸   XM_006541236
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001344893   ⟸   NM_001357964
- Peptide Label: isoform C
- UniProtKB: A0A140LI06 (UniProtKB/TrEMBL),   A0A140LIK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344892   ⟸   NM_001357963
- Peptide Label: isoform C
- UniProtKB: A0A140LI06 (UniProtKB/TrEMBL),   A0A140LIK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344891   ⟸   NM_001357962
- Peptide Label: isoform C
- UniProtKB: A0A140LI06 (UniProtKB/TrEMBL),   A0A140LIK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098906   ⟸   XM_030243046
- Peptide Label: isoform X3
- UniProtKB: A0A140LHI0 (UniProtKB/TrEMBL),   A0A140LIK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098905   ⟸   XM_030243045
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000136151   ⟸   ENSMUST00000179106
RefSeq Acc Id: ENSMUSP00000146860   ⟸   ENSMUST00000208512
RefSeq Acc Id: ENSMUSP00000146624   ⟸   ENSMUST00000208698
RefSeq Acc Id: ENSMUSP00000146421   ⟸   ENSMUST00000208213
RefSeq Acc Id: ENSMUSP00000146557   ⟸   ENSMUST00000208998
RefSeq Acc Id: ENSMUSP00000147179   ⟸   ENSMUST00000207823
RefSeq Acc Id: ENSMUSP00000147084   ⟸   ENSMUST00000207757
RefSeq Acc Id: ENSMUSP00000053341   ⟸   ENSMUST00000058771
Protein Domains
LysM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CC84-F1-model_v2 AlphaFold Q8CC84 1-293 view protein structure

Promoters
RGD ID:8664395
Promoter ID:EPDNEW_M10228
Type:initiation region
Name:Lysmd4_1
Description:Mus musculus LysM, putative peptidoglycan-binding, domain containing4 , transcript variant E, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38767,222,608 - 67,222,668EPDNEW
RGD ID:6841501
Promoter ID:MM_KWN:50974
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:AK038598_1700112J16RIK,   NM_175215,   UC009HHZ.1,   UC009HIB.1,   UC009HIC.1,   UC009HID.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36774,367,184 - 74,367,684 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922349 AgrOrtholog
Ensembl Genes ENSMUSG00000043831 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000058771 ENTREZGENE
  ENSMUST00000058771.13 UniProtKB/Swiss-Prot
  ENSMUST00000179106 ENTREZGENE
  ENSMUST00000179106.3 UniProtKB/TrEMBL
  ENSMUST00000207757.2 UniProtKB/TrEMBL
  ENSMUST00000207823 ENTREZGENE
  ENSMUST00000207823.2 UniProtKB/TrEMBL
  ENSMUST00000208213 ENTREZGENE
  ENSMUST00000208213.2 UniProtKB/TrEMBL
  ENSMUST00000208512.2 UniProtKB/TrEMBL
  ENSMUST00000208698 ENTREZGENE
  ENSMUST00000208698.2 UniProtKB/TrEMBL
  ENSMUST00000208998 ENTREZGENE
  ENSMUST00000208998.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.350.10 UniProtKB/Swiss-Prot
InterPro LYSM1-4 UniProtKB/Swiss-Prot
  LysM_dom UniProtKB/Swiss-Prot
  LysM_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:75099 UniProtKB/Swiss-Prot
MGD MGI:1922349 ENTREZGENE
NCBI Gene 75099 ENTREZGENE
PANTHER AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 4-RELATED UniProtKB/Swiss-Prot
  PTHR20932 UniProtKB/Swiss-Prot
Pfam LysM UniProtKB/Swiss-Prot
PhenoGen Lysmd4 PhenoGen
PROSITE LYSM UniProtKB/Swiss-Prot
SMART LysM UniProtKB/Swiss-Prot
UniProt A0A140LHI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A140LI06 ENTREZGENE, UniProtKB/TrEMBL
  A0A140LIK8 ENTREZGENE, UniProtKB/TrEMBL
  LYSM4_MOUSE UniProtKB/Swiss-Prot
  Q6PFQ8 ENTREZGENE
  Q8CC84 ENTREZGENE
UniProt Secondary Q6PFQ8 UniProtKB/Swiss-Prot