Lysmd4 (LysM domain containing 4)

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Gene: Lysmd4 (LysM domain containing 4) Heterocephalus glaber

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Symbol:

Lysmd4

Name:

LysM domain containing 4

RGD ID:

18907183

Description:

ASSOCIATED WITH chromosome 15q26-qter deletion syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysM and putative peptidoglycan-binding domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	4,689,264 - 4,692,902 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	4,689,536 - 4,694,577 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 15q26-qter deletion syndrome (ISO)

References

Genomics

Comparative Map Data

Lysmd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	4,689,264 - 4,692,902 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	4,689,536 - 4,694,577 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

LYSMD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	99,715,697 - 99,733,444 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	99,715,697 - 99,733,561 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	100,267,606 - 100,273,649 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	98,085,133 - 98,091,149 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	76,686,562 - 76,692,579 (-)	NCBI		Celera
Cytogenetic Map	15	q26.3	NCBI
HuRef	15	76,397,456 - 76,403,473 (-)	NCBI		HuRef
CHM1_1	15	100,108,944 - 100,114,962 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	97,479,959 - 97,497,213 (-)	NCBI		T2T-CHM13v2.0

Lysmd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	66,872,292 - 66,878,216 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	66,872,292 - 66,957,078 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	67,222,544 - 67,228,468 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	67,222,544 - 67,307,330 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	74,367,494 - 74,373,342 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	67,101,558 - 67,107,406 (+)	NCBI		MGSCv36	mm8
Celera	7	64,681,429 - 64,687,277 (+)	NCBI		Celera
Cytogenetic Map	7	C	NCBI
cM Map	7	36.71	NCBI

Lysmd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	130,249,340 - 130,255,357 (+)	NCBI		GRCr8
mRatBN7.2	1	120,839,180 - 120,845,148 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	120,839,282 - 120,845,135 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	128,836,073 - 128,841,949 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	136,006,175 - 136,012,051 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	128,810,482 - 128,816,360 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	128,199,100 - 128,204,989 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	128,199,322 - 128,203,268 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	129,265,273 - 129,271,167 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	113,042,015 - 113,047,904 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Lysmd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	27,059,941 - 27,063,459 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	27,057,845 - 27,063,459 (-)	NCBI	ChiLan1.0	ChiLan1.0

LYSMD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	89,269,913 - 89,275,973 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	92,954,175 - 92,972,832 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	78,396,860 - 78,413,774 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	97,590,076 - 97,596,035 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	97,590,076 - 97,596,035 (-)	Ensembl	panpan1.1		panPan2

LYSMD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	40,983,350 - 40,989,611 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	40,982,907 - 40,988,434 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	43,681,096 - 43,687,371 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	41,384,613 - 41,390,889 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	41,384,677 - 41,390,879 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	40,917,065 - 40,923,341 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	41,148,236 - 41,154,527 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	41,367,887 - 41,374,163 (+)	NCBI		UU_Cfam_GSD_1.0

Lysmd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	142,508,527 - 142,515,130 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936483	3,819,381 - 3,824,128 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936483	3,819,427 - 3,824,449 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LYSMD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	138,560,995 - 138,567,562 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	138,560,985 - 138,567,570 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	154,770,996 - 154,777,327 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LYSMD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	18,325,403 - 18,329,678 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	18,323,749 - 18,329,648 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	28,238,096 - 28,242,551 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013075156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01047860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000021766 ⟹ ENSHGLP00000021557

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624768	4,689,264 - 4,692,902 (+)	Ensembl

RefSeq Acc Id:

XM_013075156 ⟹ XP_012930610

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624768	4,689,536 - 4,694,577 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_012930610	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000021557

RefSeq Acc Id:

XP_012930610 ⟸ XM_013075156

Ensembl Acc Id:

ENSHGLP00000021557 ⟸ ENSHGLT00000021766

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000015399	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000021766	ENTREZGENE
NCBI Gene	Lysmd4	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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