Vmn1r60 (vomeronasal 1 receptor 60) - Rat Genome Database

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Gene: Vmn1r60 (vomeronasal 1 receptor 60) Mus musculus
Analyze
Symbol: Vmn1r60
Name: vomeronasal 1 receptor 60
RGD ID: 1616249
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EG636697; Gm7184; vomernasal 1 receptor Vmn1r60
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,547,196 - 5,548,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,542,345 - 5,550,316 (-)EnsemblGRCm39 Ensembl
GRCm3875,544,197 - 5,545,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,539,346 - 5,547,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv3775,495,799 - 5,496,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3675,147,258 - 5,150,238 (-)NCBIMGSCv36mm8
Celera75,288,640 - 5,289,542 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:123
Interacting mature miRNAs:125
Transcripts:ENSMUST00000172111, ENSMUST00000173782
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000173782   ⟹   ENSMUSP00000133943
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,547,196 - 5,548,098 (-)Ensembl
GRCm38.p6 Ensembl75,544,197 - 5,545,099 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236262   ⟹   ENSMUSP00000157873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,542,345 - 5,548,308 (-)Ensembl
GRCm38.p6 Ensembl75,539,346 - 5,545,309 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,542,345 - 5,550,316 (-)Ensembl
GRCm38.p6 Ensembl75,539,346 - 5,547,317 (-)Ensembl
RefSeq Acc Id: NM_001166732   ⟹   NP_001160204
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,547,196 - 5,548,098 (-)NCBI
GRCm3875,544,197 - 5,545,099 (-)ENTREZGENE
MGSCv3775,495,799 - 5,496,701 (-)RGD
Celera75,288,640 - 5,289,542 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001160204 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000133943
  ENSMUSP00000133943.3
  ENSMUSP00000157873.2
RefSeq Acc Id: NP_001160204   ⟸   NM_001166732
- UniProtKB: G3UY47 (UniProtKB/TrEMBL),   A0A494BA35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000157873   ⟸   ENSMUST00000236262
Ensembl Acc Id: ENSMUSP00000133943   ⟸   ENSMUST00000173782
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A494BA35-F1-model_v2 AlphaFold A0A494BA35 1-310 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000118298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000173782 ENTREZGENE
  ENSMUST00000173782.4 UniProtKB/TrEMBL
  ENSMUST00000236262.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:636697 UniProtKB/TrEMBL
MGD MGI:3645244 ENTREZGENE
NCBI Gene 636697 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r60 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A494BA35 ENTREZGENE, UniProtKB/TrEMBL
  G3UY47 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r60  vomeronasal 1 receptor 60  Gm7184  predicted gene 7184  Symbol and/or name change 5135510 APPROVED