Gm7658 (predicted gene 7658) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm7658 (predicted gene 7658) Mus musculus
Analyze
Symbol: Gm7658
Name: predicted gene 7658
RGD ID: 1614561
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AL022788; AL024247; AU040300; D1Mgi2; D1Mgi28; EG665489
Related Functional Gene: Eif3m  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39121,582,091 - 21,583,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl121,582,157 - 21,583,280 (-)EnsemblGRCm39 Ensembl
GRCm38121,511,867 - 21,513,096 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl121,511,933 - 21,513,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv37121,501,948 - 21,503,177 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36121,496,994 - 21,498,286 (-)NCBIMGSCv36mm8
Celera121,397,362 - 21,398,591 (-)NCBICelera
Cytogenetic Map1A4NCBI
cM Map17.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:10725249  



.

.
Variants in Gm7658
97 total Variants

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:103
Interacting mature miRNAs:109
Transcripts:ENSMUST00000119064, ENSMUST00000179051
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse

1 to 10 of 23 rows
AU040300  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382104,999,820 - 105,001,334UniSTSGRCm38
GRCm38121,512,032 - 21,512,178UniSTSGRCm38
MGSCv372104,839,977 - 104,841,491UniSTSGRCm37
MGSCv37121,502,113 - 21,502,259UniSTSGRCm37
Celera121,397,527 - 21,397,673UniSTS
Celera2106,233,008 - 106,234,514UniSTS
Cytogenetic Map1A4UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map2E2UniSTS
cM Map257.91UniSTS
Whitehead/MRC_RH1400.37UniSTS
RH124949  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38121,512,440 - 21,512,679UniSTSGRCm38
MGSCv37121,502,521 - 21,502,760UniSTSGRCm37
Celera121,397,935 - 21,398,174UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map1A4UniSTS
Cytogenetic Map1A5UniSTS
cM Map257.91UniSTS
RH125509  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382105,013,755 - 105,013,866UniSTSGRCm38
GRCm38121,512,754 - 21,512,865UniSTSGRCm38
MGSCv372104,853,912 - 104,854,023UniSTSGRCm37
MGSCv37121,502,835 - 21,502,946UniSTSGRCm37
Celera121,398,249 - 21,398,360UniSTS
Celera2106,247,327 - 106,247,438UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map1A4UniSTS
cM Map257.91UniSTS
UniSTS:234079  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38121,512,848 - 21,513,037UniSTSGRCm38
MGSCv37121,502,929 - 21,503,118UniSTSGRCm37
Celera121,398,343 - 21,398,532UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map1A4UniSTS
Cytogenetic Map1A5UniSTS
cM Map257.91UniSTS






RefSeq Transcripts NG_005935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000119064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl121,582,157 - 21,583,280 (-)Ensembl
GRCm38.p6 Ensembl121,511,933 - 21,513,056 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000082935 Ensembl, ENTREZGENE
MGD MGI:3648029 ENTREZGENE
NCBI Gene 665489 ENTREZGENE
PhenoGen Gm7658 PhenoGen