Gm7658 (predicted gene 7658) - Rat Genome Database

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Gene: Gm7658 (predicted gene 7658) Mus musculus
Analyze
Symbol: Gm7658
Name: predicted gene 7658
RGD ID: 1614561
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AL022788; AL024247; AU040300; D1Mgi2; D1Mgi28; EG665489
Related Functional Gene: Eif3m  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39121,582,091 - 21,583,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl121,582,157 - 21,583,280 (-)EnsemblGRCm39 Ensembl
GRCm38121,511,867 - 21,513,096 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl121,511,933 - 21,513,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv37121,501,948 - 21,503,177 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36121,496,994 - 21,498,286 (-)NCBIMGSCv36mm8
Celera121,397,362 - 21,398,591 (-)NCBICelera
Cytogenetic Map1A4NCBI
cM Map17.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10725249  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:103
Interacting mature miRNAs:109
Transcripts:ENSMUST00000119064, ENSMUST00000179051
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse

Markers in Region
AU040300  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382104,999,820 - 105,001,334UniSTSGRCm38
GRCm38121,512,032 - 21,512,178UniSTSGRCm38
MGSCv372104,839,977 - 104,841,491UniSTSGRCm37
MGSCv37121,502,113 - 21,502,259UniSTSGRCm37
Celera121,397,527 - 21,397,673UniSTS
Celera2106,233,008 - 106,234,514UniSTS
Cytogenetic Map1A4UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map2E2UniSTS
cM Map257.91UniSTS
Whitehead/MRC_RH1400.37UniSTS
RH124949  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38121,512,440 - 21,512,679UniSTSGRCm38
MGSCv37121,502,521 - 21,502,760UniSTSGRCm37
Celera121,397,935 - 21,398,174UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map1A4UniSTS
Cytogenetic Map1A5UniSTS
cM Map257.91UniSTS
RH125509  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382105,013,755 - 105,013,866UniSTSGRCm38
GRCm38121,512,754 - 21,512,865UniSTSGRCm38
MGSCv372104,853,912 - 104,854,023UniSTSGRCm37
MGSCv37121,502,835 - 21,502,946UniSTSGRCm37
Celera121,398,249 - 21,398,360UniSTS
Celera2106,247,327 - 106,247,438UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map1A4UniSTS
cM Map257.91UniSTS
UniSTS:234079  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38121,512,848 - 21,513,037UniSTSGRCm38
MGSCv37121,502,929 - 21,503,118UniSTSGRCm37
Celera121,398,343 - 21,398,532UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map1A4UniSTS
Cytogenetic Map1A5UniSTS
cM Map257.91UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_005935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000119064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl121,582,157 - 21,583,280 (-)Ensembl
GRCm38.p6 Ensembl121,511,933 - 21,513,056 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082935 Ensembl, ENTREZGENE
MGD MGI:3648029 ENTREZGENE
NCBI Gene 665489 ENTREZGENE
PhenoGen Gm7658 PhenoGen