Gm8257 (predicted pseudogene 8257) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gm8257 (predicted pseudogene 8257) Mus musculus
Analyze
No known orthologs.
Symbol: Gm8257
Name: predicted pseudogene 8257
RGD ID: 1614545
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AY358078 pseudogene; EG666725
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391444,886,989 - 44,894,814 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1444,886,661 - 44,947,760 (-)EnsemblGRCm39 Ensembl
GRCm381444,649,532 - 44,657,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1444,649,204 - 44,706,456 (-)EnsemblGRCm38mm10GRCm38
MGSCv371445,275,794 - 45,277,032 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361443,572,584 - 43,579,208 (-)NCBIMGSCv36mm8
Cytogenetic Map14C1NCBI
cM Map1422.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm8257Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm8257Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm8257Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Gm8257
294 total Variants

Predicted Target Of
Summary Value
Count of predictions:438
Count of miRNA genes:269
Interacting mature miRNAs:288
Transcripts:ENSMUST00000111860, ENSMUST00000169583, ENSMUST00000179215
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse

1 to 10 of 27 rows





RefSeq Transcripts NM_001436383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC160336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000111860   ⟹   ENSMUSP00000107491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,886,998 - 44,943,913 (-)Ensembl
GRCm38.p6 Ensembl1444,649,541 - 44,706,456 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169583   ⟹   ENSMUSP00000128723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,886,661 - 44,894,814 (-)Ensembl
GRCm38.p6 Ensembl1444,649,204 - 44,657,357 (-)Ensembl
Ensembl Acc Id: ENSMUST00000179215   ⟹   ENSMUSP00000136936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,891,829 - 44,894,683 (-)Ensembl
GRCm38.p6 Ensembl1444,654,372 - 44,657,226 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,928,229 - 44,943,908 (-)Ensembl
GRCm38.p6 Ensembl1444,690,772 - 44,706,451 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249586   ⟹   ENSMUSP00000159800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,886,998 - 44,943,901 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,928,132 - 44,947,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1444,928,145 - 44,947,756 (-)Ensembl
Protein RefSeqs NP_001423312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000107491.3
  ENSMUSP00000128723.2
  ENSMUSP00000136936.2
  ENSMUSP00000159800.1
Ensembl Acc Id: ENSMUSP00000107491   ⟸   ENSMUST00000111860
Ensembl Acc Id: ENSMUSP00000136936   ⟸   ENSMUST00000179215
Ensembl Acc Id: ENSMUSP00000128723   ⟸   ENSMUST00000169583
Ensembl Acc Id: ENSMUSP00000159800   ⟸   ENSMUST00000249586
Disks large homolog 5 N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-E9Q8R3-F1-model_v2 AlphaFold E9Q8R3 1-264 view protein structure



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000079265 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000111860.9 UniProtKB/TrEMBL
  ENSMUST00000169583.8 UniProtKB/TrEMBL
  ENSMUST00000179215.2 UniProtKB/TrEMBL
  ENSMUST00000249586.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
MGD MGI:3644430 ENTREZGENE
NCBI Gene 666725 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Gm8257 PhenoGen
UniProt A0AA74KTE2_MOUSE UniProtKB/TrEMBL
  D3Z260_MOUSE UniProtKB/TrEMBL
  E9Q8R3_MOUSE UniProtKB/TrEMBL
  J3QNS7_MOUSE UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Gm8257  predicted pseudogene 8257  Gm8257  predicted gene 8257  Symbol and/or name change 5135510 APPROVED