Foxd4 (forkhead box D4) - Rat Genome Database

Name: Foxd4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Foxd4 (forkhead box D4) Mus musculus

Analyze

Symbol:

Foxd4

Name:

forkhead box D4

RGD ID:

1614459

MGI Page

MGI

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; embryo endoderm; embryo mesoderm; lung; and neural ectoderm. Orthologous to several human genes including FOXD4 (forkhead box D4).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fkh2; forkhead box protein D4; forkhead homolog 2; forkhead-related protein FKHL9; forkhead-related transcription factor 5; FREA; FREAC-5; FREAC5; transcription factor FKH-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXD4 (forkhead box D4)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Foxd4 (forkhead box D4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Foxd4 (forkhead box D4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXD4 (forkhead box D4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxd4 (forkhead box D4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXD4 (forkhead box D4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxd4 (forkhead box D4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FOXD4L1 (forkhead box D4 like 1)	HGNC	Ensembl, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Homo sapiens (human):	FOXD4L3 (forkhead box D4 like 3)	HGNC	Ensembl, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Homo sapiens (human):	FOXD4L5 (forkhead box D4 like 5)	HGNC	Ensembl, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Homo sapiens (human):	FOXD4L6 (forkhead box D4 like 6)	HGNC	EggNOG, Ensembl, OMA, OrthoDB, Panther, PhylomeDB
Homo sapiens (human):	FOXD4L4 (forkhead box D4 like 4)	HGNC	Ensembl, OMA, OrthoDB, Panther, Treefam
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Foxd4 (forkhead box D4)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FOXD4 (forkhead box D4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FOXD4L1 (forkhead box D4 like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FOXD4L4 (forkhead box D4 like 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	FOXD4L6 (forkhead box D4 like 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	FOXD4L3 (forkhead box D4 like 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	FOXD4L5 (forkhead box D4 like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-130	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	24,876,307 - 24,878,380 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	24,876,600 - 24,878,561 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	24,898,943 - 24,901,016 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	24,899,236 - 24,901,197 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	24,973,455 - 24,975,799 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	24,966,062 - 24,968,406 (-)	NCBI		MGSCv36	mm8
Celera	19	25,674,165 - 25,676,509 (-)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	19.86	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 9p deletion syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

amitrole (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

bis(2-chloroethyl) sulfide (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

calcitriol (ISO)

choline (EXP)

cisplatin (ISO)

folic acid (EXP)

genistein (EXP)

indole-3-methanol (ISO)

L-methionine (EXP)

lead diacetate (EXP)

methimazole (ISO)

mono(2-ethylhexyl) phthalate (EXP)

Monobutylphthalate (EXP)

N-acetyl-L-cysteine (ISO)

N-nitrosodiethylamine (ISO)

rotenone (ISO)

sotorasib (ISO)

sulfadimethoxine (ISO)

testosterone (ISO)

Theaflavin 3,3'-digallate (ISO)

titanium dioxide (EXP)

trametinib (ISO)

triptonide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure morphogenesis (IBA)

cell differentiation (IBA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal eye morphology (IEA)

anophthalmia (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7689224	PMID:7957066	PMID:8530406	PMID:8861101	PMID:9449667	PMID:9895322	PMID:10208738	PMID:11820816	PMID:12412011	PMID:12477932	PMID:12812790	PMID:15618518
PMID:15857913	PMID:16602821	PMID:16884697	PMID:17389379	PMID:18287559	PMID:18973680	PMID:20932939	PMID:21267068	PMID:21873635	PMID:22045912	PMID:22711520	PMID:22972626
PMID:22988430	PMID:24952961	PMID:27092474	PMID:29992973	PMID:38355793

Genomics

Comparative Map Data

Foxd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	24,876,307 - 24,878,380 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	24,876,600 - 24,878,561 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	24,898,943 - 24,901,016 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	24,899,236 - 24,901,197 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	24,973,455 - 24,975,799 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	24,966,062 - 24,968,406 (-)	NCBI		MGSCv36	mm8
Celera	19	25,674,165 - 25,676,509 (-)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	19.86	NCBI

FOXD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	116,231 - 118,417 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	116,231 - 118,417 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	116,231 - 118,417 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	106,234 - 108,419 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	106,055 - 108,204	NCBI
Cytogenetic Map	9	p24.3	NCBI
HuRef	9	58,001 - 60,188 (-)	NCBI		HuRef
CHM1_1	9	116,562 - 118,749 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	110,353 - 112,540 (-)	NCBI		T2T-CHM13v2.0

Foxd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	231,983,872 - 231,985,565 (-)	NCBI		GRCr8
mRatBN7.2	1	222,557,494 - 222,559,189 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	222,557,360 - 222,559,159 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	242,808,886 - 242,810,186 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	242,808,965 - 242,810,186 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	250,082,104 - 250,083,404 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	228,348,202 - 228,349,654 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	228,512,922 - 228,513,225 (-)	NCBI
Celera	1	219,761,312 - 219,762,612 (-)	NCBI		Celera
Cytogenetic Map	1	q51	NCBI

Foxd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955434	4,723,198 - 4,725,013 (-)	NCBI	ChiLan1.0	ChiLan1.0

FOXD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	124,531,633 - 124,558,349 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	124,538,385 - 124,560,226 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	129,258,299 - 129,277,210 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

Foxd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	136,512,355 - 136,514,796 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936503	4,658,802 - 4,660,203 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	221,577,685 - 221,580,452 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	247,834,116 - 247,835,450 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Foxd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	4,872,270 - 4,874,153 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Foxd4
55 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	147
Count of miRNA genes:	134
Interacting mature miRNAs:	143
Transcripts:	ENSMUST00000058600
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
4141659	Pbwg20_m	postnatal body weight growth 20 (mouse)			Not determined		19	21378705	55378928	Mouse
10412251	Mnp_m	modifier of Niemann Pick type C1 (mouse)			Not determined		19	20234314	54234461	Mouse
10413881	Moe2_m	modifier of epilepsy 2 (mouse)					19	14923016	48923138	Mouse
1302004	Lfp2_m	long free running period 2 (mouse)			Not determined		19	18295162	52295381	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
1357596	Tgct3_m	testicular germ cell tumor 3 (mouse)			Not determined		19	21984091	32912719	Mouse
11039522	Tbbr4_m	Trypanosoma brucei brucei response 4 (mouse)					19	5313326	39313470	Mouse
1301336	Alcp23_m	alcohol preference locus 23 (mouse)			Not determined		19	15912607	49912719	Mouse
1558876	W3q14_m	weight 3 weeks QTL 14 (mouse)			Not determined		19	22313326	53911504	Mouse
1302019	Pgia23_m	proteoglycan induced arthritis 23 (mouse)			Not determined		19	9787453	43787602	Mouse
1301633	Alcp24_m	alcohol preference locus 24 (mouse)			Not determined		19	15912607	49912719	Mouse
14928311	Manh85_m	mandible shape 85 (mouse)					19	11914789	45914789	Mouse
4142343	Moen2_m	modifier of engrailed QTL 2 (mouse)			Not determined		19	20234314	54234461	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
12801464	Rta2_m	retinal aging 2 (mouse)					14	12302874	25302874	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1302063	Eae19_m	experimental allergic encephalomyelitis 19 (mouse)			Not determined		19	18295162	52295381	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse
1301197	Tlyr1_m	thymic lymphoma resistance 1 (mouse)			Not determined		19	20539528	25313796	Mouse
1301228	Iba4_m	induction of brown adipocytes 4 (mouse)			Not determined		19	9305715	43305821	Mouse

Markers in Region

X86368

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	24,899,133 - 24,899,331	UniSTS	GRCm38
MGSCv37	19	24,973,623 - 24,973,821	UniSTS	GRCm37
Celera	19	25,674,333 - 25,674,531	UniSTS
Cytogenetic Map	19	B	UniSTS
cM Map	19	17.5	UniSTS
Whitehead/MRC_RH	19	259.68	UniSTS

RH139093

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	24,900,485 - 24,900,693	UniSTS	GRCm38
MGSCv37	19	24,974,975 - 24,975,183	UniSTS	GRCm37
Celera	19	25,675,685 - 25,675,893	UniSTS
Cytogenetic Map	19	B	UniSTS
cM Map	19	17.5	UniSTS

Foxd4

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	24,901,109 - 24,901,895	UniSTS	GRCm38
MGSCv37	19	24,975,599 - 24,976,385	UniSTS	GRCm37
Celera	19	25,676,309 - 25,677,094	UniSTS
Cytogenetic Map	8	E1	UniSTS
Cytogenetic Map	19	B	UniSTS
cM Map	8	65.5	UniSTS
cM Map	19	17.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_008022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC138432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC138434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X71940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X86368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000058600 ⟹ ENSMUSP00000058575

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	24,876,600 - 24,878,561 (-)	Ensembl
GRCm38.p6 Ensembl	19	24,899,236 - 24,901,197 (-)	Ensembl

RefSeq Acc Id:

NM_008022 ⟹ NP_032048

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	24,876,307 - 24,878,380 (-)	NCBI
GRCm38	19	24,898,943 - 24,901,016 (-)	NCBI
MGSCv37	19	24,973,455 - 24,975,799 (-)	RGD
Celera	19	25,674,165 - 25,676,509 (-)	RGD
cM Map	19		ENTREZGENE

Sequence:

show sequence

TTAAAACACCAAGTGCTCCTTGCCAAAGGGTGTTAGAAAGAAAAAGCAGAAAAGAACAAGGAAG
CCTAACCTAGGAGCGCTCCAGTTTCCCAGCAGACTCATCCTTGCTAACTCACCCATCCCAAACC
AGGTGAGCTGCCCCCACGTCCGTCCCCTCCTCTCCCTCTTCCCTCCTATCCTCCATGAACTCAG
CAAGAGCTGGGCACCTTCGTTCCACTCCACCGCCCAGTCCTCTAAGTTCCGACCAGGATGAGGT
GGAGATCGACGTGCTGGCAGAGGAGGAAGATGGAGATCAGACGGAAGAAGAGGATGACGAGGAG
GAGAGCCATAAGTGCCTGGAGCGATCCCTGCAGAGGCCCGGAGCCCGCACTCTTGCAGGGAGGA
GCGCGGGGGACTGCGGCGATCTGAGTAACTCCTCCGGGTTCCTCCGCAAGTTCCGAGCACCACG
GACCCCGGCGACCACCACAGCCGACGGCCCGCAGCCCGCCAAACCCCCGTACTCCTACATCGCG
CTCATCACCATGGCCATCCTGCAGAGCCCGCACAAGCGCCTGACGCTCAGCGGTATCTGCGCCT
TCATCAGCGGCCGCTTCCCCTATTACCGCCGTAAGTTCCCCGCCTGGCAGAACAGCATCCGCCA
CAACCTGTCGCTCAACGACTGCTTCGTCAAGATCCCTCGCGAGCCGGGCCACCCGGGCAAGGGC
AACTATTGGAGCCTGGACCCCGCCTCCCAGGACATGTTCGACAACGGCAGCTTCCTCCGGCGCA
GGAAGCGCTTCAAGCGCCACCACCCGCCCTCGGGAGGCCACCCGCACTGCCCTTTCCCTCCACC
CGCTGTGCCCGCCACCCTGCACGTCTCCCAGCCCAGCCTCCTGCTCCGCTACTCTGCCCCACCA
CAGCCTAACCTCGCAGCTCATCCCGCTGCCCCGCCTCGGAGTCACCCGTGCGCCCCGCTGCATC
CGCATCCCATGCGCTACCTGCTGCTCGCGGCCCCGGCCTATGGCGACAACCCTAGAAAAGCGGA
AGGCGCGGACCCCGCCACCCCCTTAGCCATTCCCGCGCTGCAGCCCGTACTGGGTTCCCAGCCT
TGGGAGAGAGACCAGAGCTCTGGAACTCGGTCCGGACGCGGGTGCGCTTCGTTCACCATCGAGA
GCATCATGCAGGGGGTTACAGGAGGAGGAACTGGGTCTGCGCAGAGTCCGTCCTTTGCTCCGTG
GAGCTACTGCCACCTGCTGCAACATCCACCGTGCCTGCTGCACCCCCAGGCCGCTTCCCCTTTG
TTTCACATGTCCGCAGGTTCCCGGACAATATTGCCTCAGCAGCCGCAACCGCCGCTGCCGCTGC
AGCAAGAACAGCATCACTGTGCCATTAGCTGCGCTCCCGGTAAAGGCGTGCGGTTAGGCCAGCA
CCTGTCCGCCGTTGCGGCGCTGCTGAGGCAACAGCCTGCAGCTGACGACGGTAGGCTGACAACC
CTGGCCGCTCTTTCGGGCCGAGAGGGGACCTTGCCCGAATTTTAAGCAGCACCCAGGCCCAGCC
TCCAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTTTCTAGGTTT
GCACCACCCGCCTGCTAGGCTTGTGCGTAGAAAGCCAGCAGCGGAGTGCGCACTAAGTCCTTCC
AAATTGTTACAAATGTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAA
GTCTTGCTTGGTCTTGTCCGCTTCGGTTGTGGCTTCCACGGTTTTCCCGACTTACATACTTCCC
GAGGACCTATGACTATGAAAGTGAGTGAGGTGTTTTGCTGTTAATAAAAACAAAACAGTCTGCA
ATACAAAACATCACCATCCACATTGCTTAGGAACTGCCAGTGTTCCCAGTGGCGACTGCGACTG
CGAATGCGTACATGCTCCGAAACCCGTAGGTAATACAAATAGGGTAATTTCATAACATTTATCT
CTTGTATATACGACGTGTCCTACTCCAACGGGGAGTGTTAAAACTAAGCCTAGTTATAGAGATT
GAATAAAATACGAAACTACAATGCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_032048	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI38433	(Get FASTA)	NCBI Sequence Viewer
	AAI38435	(Get FASTA)	NCBI Sequence Viewer
	CAA50742	(Get FASTA)	NCBI Sequence Viewer
	CAA60128	(Get FASTA)	NCBI Sequence Viewer
	EDL41622	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000058575
	ENSMUSP00000058575.3
GenBank Protein	Q60688	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_032048 ⟸ NM_008022

- UniProtKB:

B2RRJ0 (UniProtKB/Swiss-Prot), Q61573 (UniProtKB/Swiss-Prot), Q60688 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MNSARAGHLRSTPPPSPLSSDQDEVEIDVLAEEEDGDQTEEEDDEEESHKCLERSLQRPGARTL
AGRSAGDCGDLSNSSGFLRKFRAPRTPATTTADGPQPAKPPYSYIALITMAILQSPHKRLTLSG
ICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSF
LRRRKRFKRHHPPSGGHPHCPFPPPAVPATLHVSQPSLLLRYSAPPQPNLAAHPAAPPRSHPCA
PLHPHPMRYLLLAAPAYGDNPRKAEGADPATPLAIPALQPVLGSQPWERDQSSGTRSGRGCASF
TIESIMQGVTGGGTGSAQSPSFAPWSYCHLLQHPPCLLHPQAASPLFHMSAGSRTILPQQPQPP
LPLQQEQHHCAISCAPGKGVRLGQHLSAVAALLRQQPAADDGRLTTLAALSGREGTLPEF

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Ensembl Acc Id:

ENSMUSP00000058575 ⟸ ENSMUST00000058600

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q60688-F1-model_v2	AlphaFold	Q60688	1-444	view protein structure

Promoters

RGD ID:

6830042

Promoter ID:

MM_KWN:26708

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney, Lung

Transcripts:

NM_008022

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	24,973,734 - 24,974,234 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1347467	AgrOrtholog
Ensembl Genes	ENSMUSG00000051490	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000058600	ENTREZGENE
	ENSMUST00000058600.4	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot
InterPro	Fork_head_dom	UniProtKB/Swiss-Prot
	FOX_domain-containing	UniProtKB/Swiss-Prot
	TF_fork_head_CS_1	UniProtKB/Swiss-Prot
	TF_fork_head_CS_2	UniProtKB/Swiss-Prot
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot
	WH_DNA-bd_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:14237	UniProtKB/Swiss-Prot
MGD	MGI:1347467	ENTREZGENE
NCBI Gene	14237	ENTREZGENE
PANTHER	FORKHEAD BOX PROTEIN	UniProtKB/Swiss-Prot
	FORKHEAD BOX PROTEIN D4-RELATED	UniProtKB/Swiss-Prot
Pfam	Forkhead	UniProtKB/Swiss-Prot
PhenoGen	Foxd4	PhenoGen
PRINTS	FORKHEAD	UniProtKB/Swiss-Prot
PROSITE	FORK_HEAD_1	UniProtKB/Swiss-Prot
	FORK_HEAD_2	UniProtKB/Swiss-Prot
	FORK_HEAD_3	UniProtKB/Swiss-Prot
SMART	SM00339	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46785	UniProtKB/Swiss-Prot
UniProt	B2RRJ0	ENTREZGENE
	FOXD4_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q61573	ENTREZGENE
UniProt Secondary	B2RRJ0	UniProtKB/Swiss-Prot
	Q61573	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype