Fam228b (family with sequence similarity 228, member B) - Rat Genome Database

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Gene: Fam228b (family with sequence similarity 228, member B) Mus musculus
Analyze
Symbol: Fam228b
Name: family with sequence similarity 228, member B
RGD ID: 1614215
MGI Page MGI
Description: Orthologous to human FAM228B (family with sequence similarity 228 member B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A830093I24Rik; hypothetical protein LOC207921; UPF0638 protein B
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,789,888 - 4,819,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,789,888 - 4,819,267 (-)EnsemblGRCm39 Ensembl
GRCm38124,739,888 - 4,769,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,739,888 - 4,769,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,753,022 - 4,776,073 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,759,902 - 4,786,253 (-)NCBIMGSCv36mm8
Celera124,677,842 - 4,701,107 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
Fam228b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,789,888 - 4,819,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,789,888 - 4,819,267 (-)EnsemblGRCm39 Ensembl
GRCm38124,739,888 - 4,769,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,739,888 - 4,769,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,753,022 - 4,776,073 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,759,902 - 4,786,253 (-)NCBIMGSCv36mm8
Celera124,677,842 - 4,701,107 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.09NCBI
FAM228B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38224,076,833 - 24,169,638 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl224,076,526 - 24,169,640 (+)EnsemblGRCh38hg38GRCh38
GRCh37224,299,703 - 24,392,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36224,153,492 - 24,246,011 (+)NCBINCBI36Build 36hg18NCBI36
Celera224,186,680 - 24,232,794 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef224,085,236 - 24,131,349 (+)NCBIHuRef
CHM1_1224,275,739 - 24,321,882 (+)NCBICHM1_1
T2T-CHM13v2.0224,111,512 - 24,204,345 (+)NCBIT2T-CHM13v2.0
Fam228b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8633,473,949 - 33,505,833 (-)NCBIGRCr8
mRatBN7.2627,754,505 - 27,786,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl627,754,506 - 27,786,537 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0630,037,995 - 30,070,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl630,038,777 - 30,053,581 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0639,817,106 - 39,849,116 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera627,223,967 - 27,256,367 (-)NCBICelera
Cytogenetic Map6q14NCBI
FAM228B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212102,349,894 - 102,437,493 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A102,353,857 - 102,441,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A24,074,642 - 24,166,411 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A24,217,534 - 24,263,434 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A24,218,442 - 24,261,486 (+)Ensemblpanpan1.1panPan2
FAM228B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11718,579,700 - 18,615,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1718,477,612 - 18,513,244 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01718,853,881 - 18,889,678 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1718,751,037 - 18,881,826 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11718,590,982 - 18,626,360 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01718,599,415 - 18,635,197 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,640,201 - 18,675,604 (+)NCBIUU_Cfam_GSD_1.0
LOC101962469
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,951,456 - 63,009,819 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364937,866,313 - 7,888,087 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364937,862,286 - 7,888,052 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100738909
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,537,226 - 114,577,956 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13114,537,223 - 114,577,993 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,802,237 - 121,842,918 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM228B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,481,456 - 83,530,835 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,485,126 - 83,531,316 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604528,638,007 - 28,687,394 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam228b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247386,425,351 - 6,440,842 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247386,424,443 - 6,445,581 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam228b
709 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:711
Count of miRNA genes:447
Interacting mature miRNAs:506
Transcripts:ENSMUST00000053458
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse

Markers in Region
29.MMHAP18FRB11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38124,756,845 - 4,757,003UniSTSGRCm38
MGSCv37124,763,651 - 4,763,809UniSTSGRCm37
Celera124,688,526 - 4,688,684UniSTS
Cytogenetic Map12A1.1UniSTS
Whitehead_YAC12 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001382825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_168577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_168578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_168579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_168580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_168581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK044133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000053458   ⟹   ENSMUSP00000050881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,796,216 - 4,819,232 (-)Ensembl
GRCm38.p6 Ensembl124,746,216 - 4,769,232 (-)Ensembl
Ensembl Acc Id: ENSMUST00000217684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,789,892 - 4,794,557 (-)Ensembl
GRCm38.p6 Ensembl124,739,892 - 4,744,557 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218199   ⟹   ENSMUSP00000151649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,796,272 - 4,818,998 (-)Ensembl
GRCm38.p6 Ensembl124,746,272 - 4,768,998 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,789,890 - 4,795,730 (-)Ensembl
GRCm38.p6 Ensembl124,739,890 - 4,745,730 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218575   ⟹   ENSMUSP00000151270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,797,907 - 4,819,267 (-)Ensembl
GRCm38.p6 Ensembl124,747,907 - 4,769,267 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218856   ⟹   ENSMUSP00000151222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,795,610 - 4,798,308 (-)Ensembl
GRCm38.p6 Ensembl124,745,610 - 4,748,308 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,789,888 - 4,812,409 (-)Ensembl
GRCm38.p6 Ensembl124,739,888 - 4,762,409 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219898   ⟹   ENSMUSP00000151706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,789,888 - 4,818,521 (-)Ensembl
GRCm38.p6 Ensembl124,739,888 - 4,768,521 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl124,791,062 - 4,795,730 (-)Ensembl
GRCm38.p6 Ensembl124,741,062 - 4,745,730 (-)Ensembl
RefSeq Acc Id: NM_001382825   ⟹   NP_001369754
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382826   ⟹   NP_001369755
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,797,907 - 4,819,234 (-)NCBI
GRCm38124,747,907 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382827   ⟹   NP_001369756
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,811,141 - 4,819,234 (-)NCBI
GRCm38124,761,141 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382828   ⟹   NP_001369757
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382829   ⟹   NP_001369758
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382830   ⟹   NP_001369759
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382831   ⟹   NP_001369760
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382832   ⟹   NP_001369761
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175431   ⟹   NP_780640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,797,907 - 4,819,234 (-)NCBI
GRCm38124,747,907 - 4,769,234 (-)NCBI
MGSCv37124,753,022 - 4,776,073 (-)RGD
Celera124,677,842 - 4,701,107 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_168577
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168578
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168579
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,797,907 - 4,819,234 (-)NCBI
GRCm38124,747,907 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168580
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: NR_168581
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,889 - 4,819,234 (-)NCBI
GRCm38124,739,889 - 4,769,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006515030   ⟹   XP_006515093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,259 (-)NCBI
GRCm38124,739,888 - 4,769,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246631   ⟹   XP_030102491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,818,519 (-)NCBI
GRCm38124,739,888 - 4,768,517 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246633   ⟹   XP_030102493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,818,519 (-)NCBI
GRCm38124,739,888 - 4,768,517 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246634   ⟹   XP_030102494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,811,944 (-)NCBI
GRCm38124,739,888 - 4,762,409 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157289   ⟹   XP_036013182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,209 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157290   ⟹   XP_036013183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157291   ⟹   XP_036013184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,226 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157292   ⟹   XP_036013185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,212 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157293   ⟹   XP_036013186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,795,671 - 4,819,212 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157294   ⟹   XP_036013187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,795,671 - 4,819,251 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950021
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,209 (-)NCBI
GRCm38124,739,888 - 4,768,517 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937470
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,209 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937471
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,209 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937472
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,259 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937473
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,251 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937474
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,818,979 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937475
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,259 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937476
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,251 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937477
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,251 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937478
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39124,789,888 - 4,819,251 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001369754 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369755 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369756 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369757 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369758 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369759 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369760 (Get FASTA)   NCBI Sequence Viewer  
  NP_001369761 (Get FASTA)   NCBI Sequence Viewer  
  NP_780640 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515093 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102491 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102493 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102494 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013182 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013183 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013184 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013185 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013186 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013187 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00430 (Get FASTA)   NCBI Sequence Viewer  
  AAI45649 (Get FASTA)   NCBI Sequence Viewer  
  BAC31793 (Get FASTA)   NCBI Sequence Viewer  
  BAC34259 (Get FASTA)   NCBI Sequence Viewer  
  EDL01358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000050881
  ENSMUSP00000050881.6
  ENSMUSP00000151222.2
  ENSMUSP00000151270
  ENSMUSP00000151270.2
  ENSMUSP00000151649
  ENSMUSP00000151649.2
  ENSMUSP00000151706.2
GenBank Protein Q497Q6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_780640   ⟸   NM_175431
- Peptide Label: isoform b
- UniProtKB: Q8BLM3 (UniProtKB/Swiss-Prot),   Q8BWN5 (UniProtKB/Swiss-Prot),   Q497Q6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515093   ⟸   XM_006515030
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030102493   ⟸   XM_030246633
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102491   ⟸   XM_030246631
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030102494   ⟸   XM_030246634
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001369759   ⟸   NM_001382830
- Peptide Label: isoform e
RefSeq Acc Id: NP_001369761   ⟸   NM_001382832
- Peptide Label: isoform f
RefSeq Acc Id: NP_001369760   ⟸   NM_001382831
- Peptide Label: isoform e
RefSeq Acc Id: NP_001369758   ⟸   NM_001382829
- Peptide Label: isoform d
RefSeq Acc Id: NP_001369754   ⟸   NM_001382825
- Peptide Label: isoform a
RefSeq Acc Id: NP_001369757   ⟸   NM_001382828
- Peptide Label: isoform c
- UniProtKB: A0A1W2P7H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001369755   ⟸   NM_001382826
- Peptide Label: isoform b
- UniProtKB: Q8BLM3 (UniProtKB/Swiss-Prot),   Q497Q6 (UniProtKB/Swiss-Prot),   Q8BWN5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369756   ⟸   NM_001382827
- Peptide Label: isoform c
- UniProtKB: A0A1W2P7H1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000151649   ⟸   ENSMUST00000218199
Ensembl Acc Id: ENSMUSP00000151222   ⟸   ENSMUST00000218856
Ensembl Acc Id: ENSMUSP00000151270   ⟸   ENSMUST00000218575
Ensembl Acc Id: ENSMUSP00000050881   ⟸   ENSMUST00000053458
Ensembl Acc Id: ENSMUSP00000151706   ⟸   ENSMUST00000219898
RefSeq Acc Id: XP_036013184   ⟸   XM_036157291
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036013183   ⟸   XM_036157290
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013185   ⟸   XM_036157292
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036013182   ⟸   XM_036157289
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013187   ⟸   XM_036157294
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036013186   ⟸   XM_036157293
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q497Q6-F1-model_v2 AlphaFold Q497Q6 1-232 view protein structure

Promoters
RGD ID:8677852
Promoter ID:EPDNEW_M16957
Type:multiple initiation site
Name:Fam228b_1
Description:Mus musculus family with sequence similarity 228, member B ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38124,769,235 - 4,769,295EPDNEW
RGD ID:6823264
Promoter ID:MM_KWN:11096
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000020967,   ENSMUST00000101631,   NM_028376,   NM_175431,   UC007MYD.1,   UC007MYG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36124,775,669 - 4,776,169 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442121 AgrOrtholog
Ensembl Genes ENSMUSG00000050545 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053458 ENTREZGENE
  ENSMUST00000053458.7 UniProtKB/Swiss-Prot
  ENSMUST00000218199 ENTREZGENE
  ENSMUST00000218199.2 UniProtKB/TrEMBL
  ENSMUST00000218575 ENTREZGENE
  ENSMUST00000218575.2 UniProtKB/Swiss-Prot
  ENSMUST00000218856.2 UniProtKB/TrEMBL
  ENSMUST00000219898.2 UniProtKB/TrEMBL
InterPro FAM228 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:207921 UniProtKB/Swiss-Prot
MGD MGI:2442121 ENTREZGENE
NCBI Gene 207921 ENTREZGENE
PANTHER PROTEIN FAM228B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR28584 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam228b PhenoGen
UniProt A0A1W2P6H6_MOUSE UniProtKB/TrEMBL
  A0A1W2P7H1 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2P7K4_MOUSE UniProtKB/TrEMBL
  F228B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BLM3 ENTREZGENE
  Q8BWN5 ENTREZGENE
UniProt Secondary Q8BLM3 UniProtKB/Swiss-Prot
  Q8BWN5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Fam228b  family with sequence similarity 228, member B  A830093I24Rik  RIKEN cDNA A830093I24 gene  Symbol and/or name change 5135510 APPROVED