Slf2 (SMC5-SMC6 complex localization factor 2) - Rat Genome Database

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Gene: Slf2 (SMC5-SMC6 complex localization factor 2) Mus musculus
Analyze
Symbol: Slf2
Name: SMC5-SMC6 complex localization factor 2
RGD ID: 1614178
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including positive regulation of cellular component organization; positive regulation of double-strand break repair; and protein localization to site of double-strand break. Predicted to be located in PML body and chromatin. Predicted to be active in nucleus and site of double-strand break. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome. Orthologous to human SLF2 (SMC5-SMC6 complex localization factor 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3632432H19; 6030443O07Rik; AU014917; Fam17; Fam178a; family with sequence similarity 178, member A; hypothetical protein LOC226151; RIKEN cDNA 6030443O07 gene; SMC5-SMC6 complex localization factor protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,906,948 - 44,972,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,919,558 - 44,972,225 (+)EnsemblGRCm39 Ensembl
GRCm381944,918,506 - 44,983,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,931,151 - 44,983,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv371945,005,609 - 45,058,277 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361944,984,430 - 45,037,098 (+)NCBIMGSCv36mm8
Celera1945,701,790 - 45,754,432 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:32325033  


Genomics

Comparative Map Data
Slf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,906,948 - 44,972,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,919,558 - 44,972,225 (+)EnsemblGRCm39 Ensembl
GRCm381944,918,506 - 44,983,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,931,151 - 44,983,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv371945,005,609 - 45,058,277 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361944,984,430 - 45,037,098 (+)NCBIMGSCv36mm8
Celera1945,701,790 - 45,754,432 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.16NCBI
SLF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,912,963 - 100,965,134 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,912,963 - 100,965,134 (+)EnsemblGRCh38hg38GRCh38
GRCh3710102,672,720 - 102,724,891 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,662,316 - 102,714,881 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410102,662,315 - 102,714,879NCBI
Celera1096,410,079 - 96,462,617 (+)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1096,300,921 - 96,353,909 (+)NCBIHuRef
CHM1_110102,956,597 - 103,009,083 (+)NCBICHM1_1
T2T-CHM13v2.010101,792,183 - 101,848,510 (+)NCBIT2T-CHM13v2.0
Slf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,731,979 - 253,794,577 (+)NCBIGRCr8
mRatBN7.21243,782,786 - 243,845,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,782,246 - 243,845,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1251,930,618 - 251,993,084 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,628,502 - 258,690,963 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01251,280,577 - 251,343,117 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01264,670,836 - 264,733,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,670,841 - 264,733,306 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01272,112,614 - 272,175,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,986,434 - 250,048,899 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1239,594,279 - 239,656,726 (+)NCBICelera
Cytogenetic Map1q54NCBI
Slf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554859,221,419 - 9,269,308 (-)NCBIChiLan1.0ChiLan1.0
SLF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,795,860 - 112,850,160 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,798,071 - 112,855,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,511,398 - 97,566,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,988,993 - 101,042,730 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,989,044 - 101,042,730 (+)Ensemblpanpan1.1panPan2
SLF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,595,194 - 13,656,644 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,595,831 - 13,651,638 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,774,925 - 13,826,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02814,073,514 - 14,124,742 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2814,063,037 - 14,123,158 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,619,475 - 13,670,490 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,660,754 - 13,711,779 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,792,519 - 13,843,753 (+)NCBIUU_Cfam_GSD_1.0
Slf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,112,896 - 33,162,908 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366004,721,327 - 4,765,915 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366004,715,504 - 4,766,273 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14111,996,783 - 112,047,885 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114111,996,781 - 112,049,309 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,919,373 - 93,983,499 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,931,456 - 93,980,297 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604854,982,585 - 55,035,109 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624831522,674 - 570,124 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624831522,190 - 573,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slf2
1896 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1168
Count of miRNA genes:589
Interacting mature miRNAs:748
Transcripts:ENSMUST00000096053
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
13504736Ifvrq6_minfluenza virus resistance QTL 6 (mouse)193690291044913949Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1301479Sluc1_msusceptibility to lung cancer 1 (mouse)Not determined193601694446761521Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1300585Pgia12_mproteoglycan induced arthritis 12 (mouse)Not determined194258685961420004Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse

Markers in Region
AU014917  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381944,982,004 - 44,982,204UniSTSGRCm38
MGSCv371945,056,494 - 45,056,694UniSTSGRCm37
Celera1945,752,647 - 45,752,847UniSTS
Cytogenetic Map19C3UniSTS
Whitehead/MRC_RH19446.13UniSTS
UniSTS:237957  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381944,982,886 - 44,983,129UniSTSGRCm38
MGSCv371945,057,376 - 45,057,619UniSTSGRCm37
Celera1945,753,529 - 45,753,772UniSTS
Cytogenetic Map19C3UniSTS
RH75803  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381944,982,217 - 44,982,322UniSTSGRCm38
MGSCv371945,056,707 - 45,056,812UniSTSGRCm37
Celera1945,752,860 - 45,752,965UniSTS
Cytogenetic Map19C3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC172097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ060323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK639201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000096053   ⟹   ENSMUSP00000093758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1944,919,558 - 44,972,225 (+)Ensembl
GRCm38.p6 Ensembl1944,931,151 - 44,983,188 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236057   ⟹   ENSMUSP00000158409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1944,930,370 - 44,970,814 (+)Ensembl
GRCm38.p6 Ensembl1944,941,931 - 44,982,375 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1944,919,602 - 44,920,493 (+)Ensembl
GRCm38.p6 Ensembl1944,931,163 - 44,932,054 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236895   ⟹   ENSMUSP00000157598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1944,919,599 - 44,971,054 (+)Ensembl
GRCm38.p6 Ensembl1944,931,160 - 44,982,615 (+)Ensembl
Ensembl Acc Id: ENSMUST00000237505   ⟹   ENSMUSP00000158404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1944,931,291 - 44,971,738 (+)Ensembl
GRCm38.p6 Ensembl1944,942,852 - 44,983,299 (+)Ensembl
RefSeq Acc Id: NM_001081225   ⟹   NP_001074694
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,602 - 44,972,225 (+)NCBI
GRCm381944,931,119 - 44,983,786 (+)NCBI
MGSCv371945,005,609 - 45,058,277 (+)RGD
Celera1945,701,790 - 45,754,432 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_175948
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,602 - 44,972,225 (+)NCBI
RefSeq Acc Id: NR_175949
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,602 - 44,972,225 (+)NCBI
RefSeq Acc Id: NR_175983
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,602 - 44,972,225 (+)NCBI
RefSeq Acc Id: XM_006527000   ⟹   XP_006527063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,906,948 - 44,971,715 (+)NCBI
GRCm381944,918,506 - 44,983,036 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011247236   ⟹   XP_011245538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,565 - 44,940,580 (+)NCBI
GRCm381944,931,126 - 44,952,129 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001782585
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,565 - 44,972,225 (+)NCBI
GRCm381944,931,126 - 44,983,786 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940142
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391944,919,565 - 44,957,562 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001074694   ⟸   NM_001081225
- Peptide Label: isoform 1
- UniProtKB: E9Q839 (UniProtKB/TrEMBL),   B2RXQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527063   ⟸   XM_006527000
- Peptide Label: isoform X1
- UniProtKB: B2RXQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245538   ⟸   XM_011247236
- Peptide Label: isoform X2
- UniProtKB: Q3UH46 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000158404   ⟸   ENSMUST00000237505
Ensembl Acc Id: ENSMUSP00000157598   ⟸   ENSMUST00000236895
Ensembl Acc Id: ENSMUSP00000158409   ⟸   ENSMUST00000236057
Ensembl Acc Id: ENSMUSP00000093758   ⟸   ENSMUST00000096053
Protein Domains
Coiled-coil SMC6 And NSE5 INteracting (CANIN)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P9P0-F1-model_v2 AlphaFold Q6P9P0 1-1278 view protein structure

Promoters
RGD ID:13679604
Promoter ID:EPDNEW_M23951
Type:multiple initiation site
Name:Slf2_1
Description:Mus musculus SMC5-SMC6 complex localization factor 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381944,931,163 - 44,931,223EPDNEW
RGD ID:6830041
Promoter ID:MM_KWN:27171
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000087330,   NM_001081225,   UC008HQC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361945,005,241 - 45,005,887 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924968 AgrOrtholog
Ensembl Genes ENSMUSG00000036097 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000096053 ENTREZGENE
  ENSMUST00000096053.6 UniProtKB/TrEMBL
  ENSMUST00000236895 ENTREZGENE
  ENSMUST00000236895.2 UniProtKB/TrEMBL
InterPro CANIN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAM178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:226151 UniProtKB/TrEMBL
MGD MGI:1924968 ENTREZGENE
NCBI Gene Slf2 ENTREZGENE
PANTHER PTHR16046 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slf2 PhenoGen
UniProt B2RXQ3 ENTREZGENE, UniProtKB/TrEMBL
  B7ZWK5_MOUSE UniProtKB/TrEMBL
  E9Q839 ENTREZGENE, UniProtKB/TrEMBL
  Q3TST9_MOUSE UniProtKB/TrEMBL
  Q3UH46 ENTREZGENE, UniProtKB/TrEMBL
  Q6P9P0 ENTREZGENE
  Q8BV45_MOUSE UniProtKB/TrEMBL
  Q8BZ50_MOUSE UniProtKB/TrEMBL
  SLF2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8C041 UniProtKB/Swiss-Prot
  Q8C0J5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Slf2  SMC5-SMC6 complex localization factor 2  6030443O07Rik  RIKEN cDNA 6030443O07 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 6030443O07Rik  RIKEN cDNA 6030443O07 gene  Slf2  SMC5-SMC6 complex localization factor 2  Symbol and/or name change 5135510 APPROVED
2017-06-06 Slf2  SMC5-SMC6 complex localization factor 2  Fam178a  family with sequence similarity 178, member A  Symbol and/or name change 5135510 APPROVED